Locus 1452

Sequence ID 3L_DroMel_CAF1
Location 4,198,186 – 4,198,287
Length 101
Max. P 0.891614
window2264

overview

Window 4

Location 4,198,186 – 4,198,287
Length 101
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 71.99
Mean single sequence MFE -26.09
Consensus MFE -14.95
Energy contribution -15.82
Covariance contribution 0.86
Combinations/Pair 1.25
Mean z-score -1.68
Structure conservation index 0.57
SVM decision value 0.97
SVM RNA-class probability 0.891614
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4198186 101 - 23771897
AGGGUUUUCACAAGGGGUUCGGUUUCACUUAACAAGGUGAAACUGGGUCAAUGUGGCCCAGUAAUAUCGAUUAGACUAAUA-----UAUAUACU-----AUAUACCCAUAU
.((((..........((((..(((((((((....)))))).((((((((.....))))))))......)))..)))).(((-----((.....)-----)))))))).... ( -29.10)
>DroSec_CAF1 47988 94 - 1
AGGUUUUUCACAAGGGGUUCGGUUUCACUUAACAAGGUGAAACUGGGUCAAUGUGGCCCAGUAAUAUCGAUUAGACU---------UAUAUACU-----ACAUAC---UAU
.(((..........(((((..(((((((((....)))))).((((((((.....))))))))......)))..))))---------).......-----....))---).. ( -24.50)
>DroSim_CAF1 48225 97 - 1
AGGUUUUUCACAAGGGGUUCGGUUUCACUUAACAAGGUGAAACUGGGUCAAUGUGGCCCAGUAAUAUCGAUUAGACU---------UAUAUACU-----AUGUACCCAUAU
.............(((..((((((((((((....)))))))((((((((.....))))))))...))))).......---------(((((...-----)))))))).... ( -27.10)
>DroEre_CAF1 45848 94 - 1
AGGUU-UUUACCAGGGGUUCGGUUUCACUCAACGAGGUGAAACUGGGUCAAUGUGGCCCAGUACUAUCGAUUAGACUGCU------A-----UG-----UAAUUCCCAUAU
.(((.-...))).((((..((((((((((......))))))))))..)).(((((((..(((.(((.....)))))))))------)-----))-----).....)).... ( -30.20)
>DroYak_CAF1 50485 99 - 1
AGGUU-UUCACAAGGGGUUCGGUUUCACUUGACGAGGUGAAACUAGGUCGAUGUGGGCCAGUAAUAUCGAUUAGCAGUCU------AAUACCCA-----UAAUACCCAUAU
.(((.-........((((..((((((((((....)))))))))).(((((((((.........)))))))))........------...)))).-----....)))..... ( -25.94)
>DroAna_CAF1 46900 103 - 1
AG--------CAGACGCUUGGAUUUCACUUGACCACUACAAACUGGGUCAUUAUGGUUUGGGAAUAUCGAUGAGUUUACUUGGGCCUAGAUCCUGACUUUAACUCUUUUAA
..--------..((..((..((((.....(((((.(........))))))....))))..))....))...(((((...(..((.......))..)....)))))...... ( -19.70)
>consensus
AGGUU_UUCACAAGGGGUUCGGUUUCACUUAACAAGGUGAAACUGGGUCAAUGUGGCCCAGUAAUAUCGAUUAGACU_CU______UAUAUACU_____AAAUACCCAUAU
..................((((((((((((....)))))))((((((((.....))))))))...)))))......................................... (-14.95 = -15.82 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:06 2006