Locus 145

Sequence ID 3L_DroMel_CAF1
Location 448,377 – 448,479
Length 102
Max. P 0.747899
window205

overview

Window 5

Location 448,377 – 448,479
Length 102
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 82.08
Mean single sequence MFE -30.23
Consensus MFE -13.94
Energy contribution -13.58
Covariance contribution -0.36
Combinations/Pair 1.29
Mean z-score -3.24
Structure conservation index 0.46
SVM decision value 0.47
SVM RNA-class probability 0.747899
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 448377 102 + 23771897
UUAUUAUUUUCUGCGCGCCAGACUCUUGAGAGGUCUCAA--GAUUAUUGGCGAGCGUA-------GGAAAUAAUAAAAGAAAUCAGGGAAAACAAAUUGAAGUCAGUGCGA
(((((((((((((((((((((..(((((((....)))))--))...)))))..)))))-------)))))))))))..((..((((..........))))..))....... ( -36.60)
>DroPse_CAF1 86000 102 + 1
---------CCUGCUCUAGAGACAUUCAAGAGGUCUCGAGCGAUUAUUGGGGAGCGUACGGUACGGGAAAUAAUAAAAGAAAUCAAGGCAAACAAAUUGAAGUCAGGGCAA
---------..((((((...(((.(((((...((((.((.(..((((((.....((((...)))).....))))))..)...)).)))).......)))))))))))))). ( -22.10)
>DroSim_CAF1 29726 102 + 1
UUAUUAUUUUCUGCGCGCCAGACUCUUGAGAGGUCUCAA--GAUUAUUGGCGAGCGUA-------GGAAAUAAUAAAAGAAAUCAGGGAAAACAAAUUGGAGUCAGUGCGA
(((((((((((((((((((((..(((((((....)))))--))...)))))..)))))-------)))))))))))..((..((((..........))))..))....... ( -35.70)
>DroEre_CAF1 31405 102 + 1
UUAUUAUUUUCUGCGCGCCAGCCUCUCGAGAGGUCUCAA--GAUUAUUGGCGAGCGUA-------GGAAAUAAUAAAAGAAAUCAGGGAAAACAAAUUGAAGUCAGUGCGA
(((((((((((((((((((((..(((.(((....))).)--))...)))))..)))))-------)))))))))))..((..((((..........))))..))....... ( -32.50)
>DroYak_CAF1 30492 102 + 1
GUAUUAUUUUCUGCGCGCCAGACUCUCGAGAGGUCUCAA--GAUUAUUGGCGGGCGUA-------GGAAAUAAUAAGAGAAAUCAGGGAAAACAAAUUGAAGUCAGUGCGA
.((((((((((((((((((((..(((.(((....))).)--))...)))))..)))))-------)))))))))).((....))...........((((....)))).... ( -32.40)
>DroPer_CAF1 83924 102 + 1
---------CCUGCUCUAGAGACAUUCAAGAGGUCUCGAGCGAUUAUUGGGGAGCGUACGGUACGGGAAAUAAUAAAAGAAAUCAAGGCAAACAAAUUGAAGUCAGGGCAA
---------..((((((...(((.(((((...((((.((.(..((((((.....((((...)))).....))))))..)...)).)))).......)))))))))))))). ( -22.10)
>consensus
UUAUUAUUUUCUGCGCGCCAGACUCUCGAGAGGUCUCAA__GAUUAUUGGCGAGCGUA_______GGAAAUAAUAAAAGAAAUCAGGGAAAACAAAUUGAAGUCAGUGCGA
...........((((((((((....(((((....))))).......)))))...........................((..((((..........))))..)).))))). (-13.94 = -13.58 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:44 2006