Locus 1448

Sequence ID 3L_DroMel_CAF1
Location 4,186,156 – 4,186,252
Length 96
Max. P 0.709864
window2257

overview

Window 7

Location 4,186,156 – 4,186,252
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 88.19
Mean single sequence MFE -28.85
Consensus MFE -24.13
Energy contribution -25.22
Covariance contribution 1.09
Combinations/Pair 1.15
Mean z-score -1.92
Structure conservation index 0.84
SVM decision value 0.37
SVM RNA-class probability 0.709864
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4186156 96 - 23771897
AGAUCACUCUUUUACUACGCACUAUGAGCCACCUCCAGCUCCGGCUCAUCCGCCGGCUACCCGCUAUGGAGUACCCGACGCUCCUGCUCCAGUGCC
..................(((((..((((.......(((.(((((......)))))......)))..(((((.......))))).)))).))))). ( -27.60)
>DroSec_CAF1 31841 96 - 1
GGAUCACUCUUUUGCUUCGCACUAUGAGCCACCUCCCGCUCCGGCUCAUCCGCCGGCUACCCACUAUGGAGUACCCGACGCUCCGGCUCCAGUGCC
(((.((......)).)))(((((..(((((..........(((((......)))))...........(((((.......)))))))))).))))). ( -32.10)
>DroSim_CAF1 36783 96 - 1
GGAUCACUCUUUUGCUUCGCACUAUGAGCCACCUCCAGCUCCGGCUCAUCCGCCGGCUACCCGCUAUGGAGUACCCGACGCUCCGGCUCCAGUGCC
(((.((......)).)))(((((..(((((......(((.(((((......)))))......)))..(((((.......)))))))))).))))). ( -32.90)
>DroEre_CAF1 32250 96 - 1
UGAUCACUCUUUUGCUUCCCACUAUGAGCCUCCUCCAGCUCCGGCUCAUCCGCCGGCUACCCGCUAUGGAGUACCCGAGGCUCCGGCUCCAGUACC
....................(((..(((((.((((..((((((((......)))(((.....)))..)))))....))))....))))).)))... ( -27.70)
>DroYak_CAF1 36316 96 - 1
UGAUCACUCUUUUGCUACGCACUAUGAGCCUCCUCCCGCUCCGGCUCAUCCGCCGGCUACUCGCUAUGGAGUACCCGAUGCACCAGCUCCAGUGCC
..................((((((((((((............)))))))..(((((.(((((......))))).)))..)).........))))). ( -27.10)
>DroAna_CAF1 32958 96 - 1
GGACCAUUCAUUCGCCUCACACUAUGAGCCGCCUCCAGCUCCGGCUCAUCCGCCCUCCACGCGCUACGGAGUACCCUCGAUUCCGGCUCCGGUUCC
(((((........((........((((((((..........))))))))..((.......))))..((((((.......)))))).....))))). ( -25.70)
>consensus
GGAUCACUCUUUUGCUUCGCACUAUGAGCCACCUCCAGCUCCGGCUCAUCCGCCGGCUACCCGCUAUGGAGUACCCGACGCUCCGGCUCCAGUGCC
..................(((((..(((((..........(((((......)))))...........(((((.......)))))))))).))))). (-24.13 = -25.22 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:59 2006