Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,182,914 – 4,183,028 |
Length | 114 |
Max. P | 0.632692 |
Location | 4,182,914 – 4,183,028 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.82 |
Mean single sequence MFE | -36.55 |
Consensus MFE | -22.35 |
Energy contribution | -22.24 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.50 |
Mean z-score | -1.64 |
Structure conservation index | 0.61 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4182914 114 + 23771897 CGUCGCAGUUUUGGUAUUAACCUCGACGUGCUGUUGGAAGAUAACUCAAACUUCCUAGCGCAGGCCGAUCUCAUUACGUUUUCGGAGCAGGAGAUAGGCCUCGCCCAAUUGCAG ....((((((..(((............((((((..(((((..........)))))))))))(((((.(((((....((....))......))))).))))).))).)))))).. ( -37.40) >DroVir_CAF1 31890 114 + 1 CGUCGCAGCUUUGGCAUCAAUAUGGACGUGCUGCUGGAGGACAACACCAGUUUUCUGGCACAAGCCGAUCUUAUUACGUUCUCCGAUCAGGAAAUUAACCUUGCUCAGCUGCAG ....((((((..((((.......(((((((.(((..((((((.......))))))..))).(((.....)))..)))))))(((.....))).........)))).)))))).. ( -35.60) >DroGri_CAF1 33600 114 + 1 AGGCGCAGCUUUGGUAUCAACAUGGAUGUGCUCCUGGAGGAUAAUUCCAGUUUUCUGGCUCAGGCCGAUCUAAUAACGUUCUCUGAGCAGGAAAUCGGACUCGCACAACUGCAA ....((((((.((.......)).)).((((((((....)))....(((.((((((((.((((((.((.........))...)))))))))))))).)))...))))).)))).. ( -34.00) >DroWil_CAF1 44877 114 + 1 CGUCGCAGUUUUGGUAUUAAUAUGGAUGUUCUAUUGGAAGAUAAUUCCAAUUUUUUGGCACAAGCGGAUCUUAUUACGUUUUCGGAUCAAGAAAUUGGCCUUGCUCAGCUCCAG .(..((..(((..(((..((((....)))).)))..)))(((((..(((((((((((((..(((((..........)))))...).))))))))))))..))).)).))..).. ( -22.00) >DroMoj_CAF1 31940 114 + 1 CGUCGCAGCUUUGGCAUCAAUAUGGAUGUGUUGCUGGAAGACAAUUCCAGUUUCCUGGCGCAAGCUGAUCUGAUUACAUUCUCGGAUCAGGAGAUUGGACUGGCCCAACUGCAG .(((.((((....(((((......)))))...))))...)))...((((((((((((((....)))(((((((........))))))))))))))))))...((......)).. ( -43.80) >DroAna_CAF1 29715 114 + 1 CGACGCAGCUUUGGCAUCAAUAUGGAUGUCCUACUGGAGGAUAACUCCACCUUCCUGGCCCAAGCCGAUCUGAUUACAUUUUCGGAUCAGGAGAUCGGACUGGCCCAGCUGCAG ....((((((..((((((......)))((((...(((((.....)))))..((((((((....)))(((((((........))))))))))))...))))..))).)))))).. ( -46.50) >consensus CGUCGCAGCUUUGGCAUCAAUAUGGAUGUGCUGCUGGAAGAUAACUCCAGUUUCCUGGCACAAGCCGAUCUGAUUACGUUCUCGGAUCAGGAAAUUGGACUCGCCCAACUGCAG ....((((((..(((.................(((((((.....)))))))((((((((....)))((((..............))))))))).........))).)))))).. (-22.35 = -22.24 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:56 2006