Locus 1445

Sequence ID 3L_DroMel_CAF1
Location 4,182,079 – 4,182,199
Length 120
Max. P 0.654067
window2252

overview

Window 2

Location 4,182,079 – 4,182,199
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.50
Mean single sequence MFE -40.70
Consensus MFE -20.11
Energy contribution -20.00
Covariance contribution -0.11
Combinations/Pair 1.42
Mean z-score -2.07
Structure conservation index 0.49
SVM decision value 0.25
SVM RNA-class probability 0.654067
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4182079 120 + 23771897
AUGAUUAAGAACGACAGAAAGUUCUUCCGCAAGCGGUAUGGCGUCCAGUUUGUGCUGGACGUGGUGCGUCAAUAUUACUCUACACCGGACAGCAUCAGCGAUGAUGAUGCGAAAACCAUU
.((((.((((((........)))))).((....))((((.(((((((((....))))))))).))))))))...............((...((((((.......)))))).....))... ( -38.20)
>DroVir_CAF1 31057 120 + 1
AUGAUCAAGAACGAUCGCAAGUACUUCCGGCGACGCUACGGCGUGCAGUUCAUGCUGGACGUGGUGCGUCAAUACUAUAGCACGCCGGAUAACAUUUGCAGCGACGAUGCGCGCACAAUU
..((((......))))((((((...(((((((((((.((.((((.((((....)))).)))).)))))))....(....)...))))))....)))))).(((.((...)))))...... ( -47.80)
>DroPse_CAF1 28469 120 + 1
AUGAUCAAGAACGAUCGCAAGUUCUAUCGCCGGCACUAUGGCGUCCAGUUCGUGCUGGACGUGGUCCGGCAGUACUACUCGACGCCGGACAACAUCAGCAACGACGAUGCGAAGACCAUA
(((.((.(((((........)))))((((.((...((((((((((((((....))))))))).(((((((.((........)))))))))..))).))...)).)))).....)).))). ( -43.90)
>DroGri_CAF1 32466 120 + 1
AUGAUCAAGAAUGAUCGGAAAUACUUUCGACGACGCUAUGGCGUCCAGUUCAUGUUGGAUGUGGUGCGUCAGUAUUACAGCACACCGGAUAAUAUCUGCAGCGAUGAUGCAAGAACCAUU
..(((((....)))))((.............(((((.((.((((((((......)))))))).))))))).((((((..((....(((((...)))))..))..)))))).....))... ( -37.10)
>DroMoj_CAF1 31110 120 + 1
AUGAUCAAGAAUGACCGGAAAUACUUCCGACGACGCUAUGGUGUUCAGUUCAUGUUGGACGUAGUGCGUCAGUACUACAGCACACCGGAUAACAUCUCUACCGACGAUGCGCGCACUAUU
...............(((((....)))))..(.(((..((((((.(.((((.....))))(((((((....))))))).).)))))).....((((((....)).)))).))))...... ( -33.60)
>DroAna_CAF1 28882 120 + 1
AUGAUCAAGAACGACAGAAAGUUCUUCCGGCGGCGCUACGGCGUUCAGUUUGUUCUGGACGUGGUGCGUCAGUACUACUCCACGCCGGACAGCAUCAGCGAUGAGGACGCCAAAACCAUA
.(((((.(((((........)))))(((((((((((....))))...........((((.(((((((....))))))))))))))))))..).))))(((.......))).......... ( -43.60)
>consensus
AUGAUCAAGAACGACCGAAAGUACUUCCGACGACGCUAUGGCGUCCAGUUCAUGCUGGACGUGGUGCGUCAGUACUACACCACACCGGACAACAUCAGCAACGACGAUGCGAAAACCAUU
.........................((((..(((((.((.((((((((......)))))))).))))))).((........))..))))........(((.......))).......... (-20.11 = -20.00 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:54 2006