Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,178,714 – 4,178,807 |
Length | 93 |
Max. P | 0.998987 |
Location | 4,178,714 – 4,178,807 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 71.27 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -15.30 |
Energy contribution | -15.26 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.22 |
Mean z-score | -2.65 |
Structure conservation index | 0.57 |
SVM decision value | 3.31 |
SVM RNA-class probability | 0.998987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4178714 93 + 23771897 A----GAGGCAGUGAUGGAGUGUAACUAACUAC--------------UGAUGAGU-CUGAUCCCAGUUUAAGUUUAAGUGACCCAUCACUGCCCCAUAACAGUUUGGCCCAC .----..(((((((((((.((...(((((((((--------------((..((..-....)).))))...))))..))).)))))))))))))(((........)))..... ( -29.20) >DroSec_CAF1 24400 93 + 1 A----GAGGCAGUGAUGGAGUGAAACUAACUGC--------------UGAUGAAU-CAGAUCCCAACUUAAGUUUAACUGACCCAUCACUGCCCUAUAACUGUUUGGCCUAC (----(.(((((((((((.((.(....((((.(--------------(((....)-)))...........))))....).)))))))))))))))................. ( -27.30) >DroSim_CAF1 28931 93 + 1 A----AAGGCAGUGAUGGAGUGUAACUAACUGC--------------UGAUAAAU-CAGAUCCCAACUUAAGUUUAACUGACCCAUCACUGCCCCAUAAUUGUGUGGCCCAC .----..(((((((((((.((......((((.(--------------(((....)-)))...........))))......)))))))))))))(((((....)))))..... ( -28.90) >DroEre_CAF1 24797 112 + 1 GGACUGAGCCAGUGAUGGAGUGUAACUACCAACCGCCGUAACAAGCCUAAUGUAACAGAUUUCCCACCUAAGUUUAUUACUCCAAUCACUGCCCCAUAAUUGUUUGGCCCAC ((.(..((((((((((((((((.((((..........((.(((.......))).)).(......).....))))...)))))).)))))))..........)))..).)).. ( -25.20) >DroYak_CAF1 28837 86 + 1 A----AGGGCAGUGAUGGAGUGUAACUACUAGU------------------U----CAAUUUCCUACCUAUGUUCAAUUCUCCAAUCGCUGCCCCAUAAUUGUUUGGCCCAC .----.((((((((((((((.......(((((.------------------.----...........))).))......)))).)))))))))).................. ( -24.24) >consensus A____GAGGCAGUGAUGGAGUGUAACUAACUGC______________UGAUGAAU_CAGAUCCCAACUUAAGUUUAACUGACCCAUCACUGCCCCAUAAUUGUUUGGCCCAC .......(((((((((((((.....))......................................((....)).........)))))))))))(((........)))..... (-15.30 = -15.26 + -0.04)
Location | 4,178,714 – 4,178,807 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 71.27 |
Mean single sequence MFE | -29.78 |
Consensus MFE | -16.84 |
Energy contribution | -16.72 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.39 |
Mean z-score | -2.24 |
Structure conservation index | 0.57 |
SVM decision value | 2.30 |
SVM RNA-class probability | 0.991968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4178714 93 - 23771897 GUGGGCCAAACUGUUAUGGGGCAGUGAUGGGUCACUUAAACUUAAACUGGGAUCAG-ACUCAUCA--------------GUAGUUAGUUACACUCCAUCACUGCCUC----U .................(((((((((((((((.(((..((((...(((((((....-..)).)))--------------)))))))))...)).)))))))))))))----. ( -31.50) >DroSec_CAF1 24400 93 - 1 GUAGGCCAAACAGUUAUAGGGCAGUGAUGGGUCAGUUAAACUUAAGUUGGGAUCUG-AUUCAUCA--------------GCAGUUAGUUUCACUCCAUCACUGCCUC----U ..................((((((((((((...(((.(((((...(((((((....-..)).)))--------------))....))))).))))))))))))))).----. ( -31.50) >DroSim_CAF1 28931 93 - 1 GUGGGCCACACAAUUAUGGGGCAGUGAUGGGUCAGUUAAACUUAAGUUGGGAUCUG-AUUUAUCA--------------GCAGUUAGUUACACUCCAUCACUGCCUU----U (((.....)))......((((((((((((((((((((.(((....)))..)).)))-)).....(--------------((.....))).....)))))))))))))----. ( -30.60) >DroEre_CAF1 24797 112 - 1 GUGGGCCAAACAAUUAUGGGGCAGUGAUUGGAGUAAUAAACUUAGGUGGGAAAUCUGUUACAUUAGGCUUGUUACGGCGGUUGGUAGUUACACUCCAUCACUGGCUCAGUCC ..((((..........((((.(((((((.(((((...........((((.((..(((......)))..)).))))(((........)))..)))))))))))).)))))))) ( -32.30) >DroYak_CAF1 28837 86 - 1 GUGGGCCAAACAAUUAUGGGGCAGCGAUUGGAGAAUUGAACAUAGGUAGGAAAUUG----A------------------ACUAGUAGUUACACUCCAUCACUGCCCU----U .................(((((((.(((.((((.....(((.(((...........----.------------------.)))...)))...))))))).)))))))----. ( -23.02) >consensus GUGGGCCAAACAAUUAUGGGGCAGUGAUGGGUCAAUUAAACUUAAGUUGGGAUCUG_AUUCAUCA______________GCAGUUAGUUACACUCCAUCACUGCCUC____U .................((((((((((((((.......((((..(((((...............................)))))))))....))))))))))))))..... (-16.84 = -16.72 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:52 2006