| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,175,255 – 4,175,372 |
| Length | 117 |
| Max. P | 0.849095 |
| Location | 4,175,255 – 4,175,372 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -42.47 |
| Consensus MFE | -27.37 |
| Energy contribution | -26.65 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4175255 117 + 23771897 CCAC---GCCGGGUCCGUACAUCGCGCAGAGUCCGGCGGGCUCGCAGAUGACGCCCAACUCGGAGAUCAACUCGUUCGGUCACCAGCUGAAAGUCCAGAUGGCCGACGAGCUAUCGAGGG ((..---.((((((.(((.((((..((.((((((...)))))))).)))))))....)))))).(((...(((((.((((((....(((......))).)))))))))))..)))..)). ( -46.30) >DroVir_CAF1 23980 117 + 1 CCAC---AUCCGGCCACUAUAUAGCCCAGUCGCCGGCGGGCUCACAAAUGACGCCCAAUUCGGAGAUCAAUUCGUUUGGCCAUCAGCUGAAAGUCCAAAUGGCCGACGAGUUGUCCAGGG ((..---..(((((.(((.........))).))))).(((((((....))).)))).....(((...(((((((((.((((((..((.....))....)))))))))))))))))).)). ( -43.10) >DroGri_CAF1 23821 117 + 1 CCAC---AUCCGGCCAUUACAUUGCCCAAUCGCCGGCGGGCUCACAAAUGACGCCCAAUUCGGAAAUCAAUUCGUUUGGCCAUCAACUCAAGGUGCAAAUGGCCGAUGAAUUGUCCAGAG ....---..(((((.(((.........))).))))).(((((((....))).)))).....(((...(((((((((.((((((..((.....))....)))))))))))))))))).... ( -38.40) >DroWil_CAF1 34877 117 + 1 CUAC---ACCUGGCCUAUAUAUAGCACAGUCGCCGGCGGGAUCACAGAUGACGCCCAAUUCGGAAAUUAACUCAUUCGGUCAUCAGCUUAAAGUACAAAUGGCCGAUGAGUUGUCCAGGG ....---.(((((((........((......)).((((..(((...)))..))))......))....((((((((.(((((((..((.....))....))))))))))))))).))))). ( -36.80) >DroMoj_CAF1 23646 120 + 1 CCACUCAAUCCGGCCACUACAUCGCCCAGUCUCCAGCGGGCUCACAAAUGACGCCCAACUCGGAGAUCAAUUCGUUCGGCCAUCAGCUGAAGGUGCAAAUGGCCGAUGAAUUGUCUAGAG ...(((.....(((.........)))..((((((((.(((((((....))).))))..)).))))))((((((((.(((((((..((.......))..)))))))))))))))....))) ( -44.10) >DroAna_CAF1 22042 117 + 1 CCAC---GCCGGGCAAUUACAUAGCCCAGAGCCCGGCGGGAUCGCAGAUGACACCAAAUUCCGAGAUGAACUCGUUUGGCCACCAGUUGAAAGUCCAGAUGGCCGACGAGUUGUCCCGGG ((.(---(((((((................))))))))))....................(((.(((.((((((((.(((((....(((......))).)))))))))))))))).))). ( -46.09) >consensus CCAC___ACCCGGCCACUACAUAGCCCAGUCGCCGGCGGGCUCACAAAUGACGCCCAAUUCGGAGAUCAACUCGUUCGGCCAUCAGCUGAAAGUCCAAAUGGCCGACGAGUUGUCCAGGG .........((((..........((..........))(((((((....))).))))...))))....((((((((.(((((((..((.....))....)))))))))))))))....... (-27.37 = -26.65 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:49 2006