Locus 144

Sequence ID 3L_DroMel_CAF1
Location 439,207 – 439,304
Length 97
Max. P 0.964097
window204

overview

Window 4

Location 439,207 – 439,304
Length 97
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 94.75
Mean single sequence MFE -18.28
Consensus MFE -16.01
Energy contribution -15.70
Covariance contribution -0.31
Combinations/Pair 1.15
Mean z-score -2.68
Structure conservation index 0.88
SVM decision value 1.56
SVM RNA-class probability 0.964097
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 439207 97 - 23771897
ACCC---AUCUCUUUUGAUGGCCCGUCUGGCAUUCUCUUACUUCCCUGUUUAUUUACAACACUUGGGAUGGCCUGGUCCAUUUACACAUUUCACCUCUUU
....---.........(((((.(((...(((...........((((((((.......))))...))))..)))))).))))).................. ( -14.92)
>DroSec_CAF1 20207 97 - 1
ACCC---AUCUCUUUUGAUGGCCCGUCUGGCCUUCUCCUACUUCCCUGUUUAUUUACAUCACUUAGGAUGGCCUGGUCCAUUUACACAUUUCACCUCUUU
....---.........(((((.(((...((((...(((((......(((......))).....))))).))))))).))))).................. ( -19.80)
>DroSim_CAF1 20478 97 - 1
ACCC---AUCUCUUUUGAUGGCCCGUCUGGCCUCCUCUUACUUCCCUGUUUAUUUACAUCACUUGGGAUGGCCUGGUCCAUUUACACAUUUCACCUCUUU
..((---(((((...((((((((.....))))...............((......))))))...)))))))............................. ( -18.40)
>DroYak_CAF1 20852 100 - 1
ACCCAGCACCUCUUUUGAUGGCCUGUCUGGCCUUCUCUUACUUCCCUGUUUAUUUACAACACUUGGGAUGGCCUGGUCCAUUUACACAUUUCACCUCUUU
..((((..((......((.((((.....)))).)).......((((((((.......))))...)))).)).))))........................ ( -20.00)
>consensus
ACCC___AUCUCUUUUGAUGGCCCGUCUGGCCUUCUCUUACUUCCCUGUUUAUUUACAACACUUGGGAUGGCCUGGUCCAUUUACACAUUUCACCUCUUU
................(((((.(((...((((...(((((......(((......))).....))))).))))))).))))).................. (-16.01 = -15.70 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:43 2006