| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,156,699 – 4,156,817 |
| Length | 118 |
| Max. P | 0.920562 |
| Location | 4,156,699 – 4,156,817 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.60 |
| Mean single sequence MFE | -35.53 |
| Consensus MFE | -19.06 |
| Energy contribution | -18.37 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.920562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4156699 118 - 23771897 AAAACG--CACCUGCCAAACGCAUUAAAUAGAGCUACAAUCUCUGUUCGCGACAGCCUGAAGAUGGGAUCCGCUUCGAUGUGCGGCUUGUCCCACAACCCGCUUUCCGUGGCCAGAUUGA ....((--(...(((.....)))...(((((((.......))))))).))).((..(((....((((((((((........))))...))))))....((((.....)))).)))..)). ( -32.80) >DroVir_CAF1 2339 120 - 1 AAAAUUUGCACCUGCCGAAGGCAUUGAAUAAUGCCACGAUUUCUGUGCGCGACAGCCUAAAGAUGGGAUCAGAAUCGAUGUGUGGUUUGUCCCACAGACCGCUUUCGGUUGCCAAAUUGA ..((((((((...((((((((((((((.....((((((.....)))).))((...((((....)))).))....)))))))((((((((.....))))))))))))))))).)))))).. ( -38.50) >DroGri_CAF1 2218 118 - 1 UAAACC--CACCUGCCAAAGGCAUUAAAUAACGCCACGAUUUCUGUGCGUGACAAUCUGAAAAUGGGAUCAGUCUCAAUUUGCGGCUGAUCCCAAAUUCCACUCUCCGUUGCAAAAUUGA ......--...........(((..........))).((((((.((((((.((......(((..(((((((((((.(.....).)))))))))))..))).....)))).)))))))))). ( -30.90) >DroWil_CAF1 5201 118 - 1 AUAACU--CACCUGCCAAAGGCAUUAAAUAGAGCUACUAUUUCACUACGUGAUAGCCUAAAUAUGGGAUCCGCUUCAAUAUGCGGUUUAUCCCAAAUACCGCUCUCUGUUGCCAAAUUCA ......--...........((((......(((((..(((((.(.....).)))))........((((((((((........))))...))))))......)))))....))))....... ( -29.50) >DroMoj_CAF1 2227 118 - 1 AAAACU--AACCUGCCAAAGGCAUUGAAGAGCGCUACAAUUUCCGUGCGCGACAAUCGGAAUAUGGGAUCCGCCUCGAUGUGCGGUUUAUCCCAUAUCCCGCUUUCCGUUGCCAAAUUCA ......--...........((((.((.((((((((((.......))).)).......((.((((((((((((((.....).))))...))))))))).))))))).)).))))....... ( -37.80) >DroAna_CAF1 2146 118 - 1 AACACC--CACCUGCCAAAGGCGUUAAAAAGAGCCACAAUUUCCGUACGUGAGAGCCGGAAAAUGGGAUCUGCCUCAAUGUGUGGCUUAUCCCACAGCCCGCUCUCCGUCGCCAGGUUGA .....(--.(((((.....(((..........)))........((.(((.((((((.((....((((((..(((.(.....).)))..))))))...)).))))))))))).))))).). ( -43.70) >consensus AAAACU__CACCUGCCAAAGGCAUUAAAUAGAGCCACAAUUUCUGUGCGCGACAGCCUGAAAAUGGGAUCCGCCUCAAUGUGCGGCUUAUCCCACAUCCCGCUCUCCGUUGCCAAAUUGA ............(((.....))).............((((((....(((.((.(((.......((((((..(((.(.....).)))..))))))......))).)))))....)))))). (-19.06 = -18.37 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:40 2006