Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,155,542 – 4,155,656 |
Length | 114 |
Max. P | 0.834266 |
Location | 4,155,542 – 4,155,656 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.36 |
Mean single sequence MFE | -22.72 |
Consensus MFE | -10.50 |
Energy contribution | -13.00 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.21 |
Mean z-score | -2.39 |
Structure conservation index | 0.46 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4155542 114 + 23771897 UCUACCAGAUACUUUAUUAACGUAUA----GAUAAUUAUUUAUACCGAUAAUGCCGUUCAAGAAUGUAUUGAUAUAUUUGUGAAAAGCUUUAUCUGUUUCUUCAAAGAUUACUUAACC-- (((...(((.((.........(((((----(((....)))))))).(((((.((..((((.(((((((....))))))).))))..)).))))).)).)))....)))..........-- ( -21.40) >DroSim_CAF1 5018 120 + 1 UCAACCAGAUACCUUAUUAACAUCUAUACGUAUAAUUAUUUCUACCGAUAAUGCCGUUCAAGAAUGUAUUGAUAUAUUCCUGAAAAGCGUUAUCAGUUUCUUUAAAGAUUACUUAACUUA .............................(((...(((.....((.((((((((..((((.(((((((....))))))).))))..)))))))).)).....)))....)))........ ( -21.40) >DroEre_CAF1 1308 94 + 1 UUAACCAGGUAUGAUAUAAGCGUAUA----GAUAAUUGUUUAUUCCGAUUAUGCC--------------------AUUCGUGAACAGCUUUAUCAGUUUGGUUAAAGAUUACUUAACG-- ((((((((...(((((.((((.....----.(((((((.......)))))))...--------------------....(....).)))))))))..)))))))).............-- ( -19.30) >DroYak_CAF1 5259 114 + 1 UUAGCCAGAUAUCGUAAGAACGUAUA----GAUAAUUAUUUAUACUGAUAAUGCCGUUUAAGAAUAUAUUUAUAUAUUCGUGAAAAGCAUUAUCAGUUUGCUUAAAGAUUACUUAACC-- ((((.(((((.((....))..(((((----(((....))))))))(((((((((..((((.(((((((....))))))).))))..)))))))))))))).)))).............-- ( -28.80) >consensus UCAACCAGAUACCUUAUUAACGUAUA____GAUAAUUAUUUAUACCGAUAAUGCCGUUCAAGAAUGUAUUGAUAUAUUCGUGAAAAGCUUUAUCAGUUUCUUUAAAGAUUACUUAACC__ ..............................................((((((((..((((.(((((((....))))))).))))..)))))))).......................... (-10.50 = -13.00 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:38 2006