Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,151,869 – 4,151,989 |
Length | 120 |
Max. P | 0.766695 |
Location | 4,151,869 – 4,151,989 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -31.19 |
Consensus MFE | -27.72 |
Energy contribution | -27.83 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.85 |
Structure conservation index | 0.89 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4151869 120 + 23771897 UAUCGCCACCCAUUUCCUAUCCAUUGUCUAGACAUUUCCAAGAUCCAAUGUCUAGGCAAAUGAGUACAGAGACAAUCCGCCUGCGUGUCCUUCGCGGAUGUUCCCAGGCUCCUUUCGUUC ....(((..........((..(((((((((((((((..........))))))))))).))))..))..(..(((.(((((.............))))))))..)..)))........... ( -30.92) >DroSim_CAF1 1464 120 + 1 UAUCGCCACCCAUUUCCUAUCCAUUGUCUAGACAUUUCCAAGAUCCGAUGUCUAGGCAAAUGAGCACAGAGACAAUCCGCCUGCGUGUCCUUCGCGGAUGUUCCCAGGCUCCUUUCGUUC .......................(((((((((((((..........)))))))))))))..((((...(..(((.(((((.............))))))))..)...))))......... ( -31.82) >DroYak_CAF1 1644 117 + 1 UAUCGCCACCCAUUUCCUAUCCAUUGUCUAGACAGUUCCAAGAUCCAAUGUCUAGGCAAAUGAGUACAGAGACAAUC---CUGCGAGUCCUUCGCGGAUGUUCCCAGGCUCCUUUCGUUG ....(((..........((..(((((((((((((..............))))))))).))))..))..(..(((.((---(.(((((...)))))))))))..)..)))........... ( -30.84) >consensus UAUCGCCACCCAUUUCCUAUCCAUUGUCUAGACAUUUCCAAGAUCCAAUGUCUAGGCAAAUGAGUACAGAGACAAUCCGCCUGCGUGUCCUUCGCGGAUGUUCCCAGGCUCCUUUCGUUC ....(((.....((((....((((((((((((((((..........))))))))))).)))).)....))))........(((((.......))))).........)))........... (-27.72 = -27.83 + 0.11)
Location | 4,151,869 – 4,151,989 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -39.80 |
Consensus MFE | -35.05 |
Energy contribution | -36.17 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.21 |
Structure conservation index | 0.88 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4151869 120 - 23771897 GAACGAAAGGAGCCUGGGAACAUCCGCGAAGGACACGCAGGCGGAUUGUCUCUGUACUCAUUUGCCUAGACAUUGGAUCUUGGAAAUGUCUAGACAAUGGAUAGGAAAUGGGUGGCGAUA ...(....)..(((.((((..((((((...(....)....))))))..))))...((((((((.((((..(((((....(((((....))))).)))))..))))))))))))))).... ( -40.80) >DroSim_CAF1 1464 120 - 1 GAACGAAAGGAGCCUGGGAACAUCCGCGAAGGACACGCAGGCGGAUUGUCUCUGUGCUCAUUUGCCUAGACAUCGGAUCUUGGAAAUGUCUAGACAAUGGAUAGGAAAUGGGUGGCGAUA ...(....)..(((.((((..((((((...(....)....))))))..))))...((((((((.((((..(((..(.(((.(((....))))))).)))..))))))))))))))).... ( -37.10) >DroYak_CAF1 1644 117 - 1 CAACGAAAGGAGCCUGGGAACAUCCGCGAAGGACUCGCAG---GAUUGUCUCUGUACUCAUUUGCCUAGACAUUGGAUCUUGGAACUGUCUAGACAAUGGAUAGGAAAUGGGUGGCGAUA ...(....)..(((.((((..((((((((.....)))).)---)))..))))...((((((((.((((..(((((....(((((....))))).)))))..))))))))))))))).... ( -41.50) >consensus GAACGAAAGGAGCCUGGGAACAUCCGCGAAGGACACGCAGGCGGAUUGUCUCUGUACUCAUUUGCCUAGACAUUGGAUCUUGGAAAUGUCUAGACAAUGGAUAGGAAAUGGGUGGCGAUA ...(....)..(((.((((..((((((...(....)....))))))..))))...((((((((.((((..(((((....(((((....))))).)))))..))))))))))))))).... (-35.05 = -36.17 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:25 2006