Locus 1432

Sequence ID 3L_DroMel_CAF1
Location 4,151,413 – 4,151,532
Length 119
Max. P 0.849435
window2228

overview

Window 8

Location 4,151,413 – 4,151,532
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.53
Mean single sequence MFE -35.40
Consensus MFE -31.87
Energy contribution -30.77
Covariance contribution -1.10
Combinations/Pair 1.13
Mean z-score -2.09
Structure conservation index 0.90
SVM decision value 0.78
SVM RNA-class probability 0.849435
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4151413 119 - 23771897
AAUUGCAAUCUGCAAUGUUUUGGCAACAGGACGACGUCAACAGCUUCUCAAGACUCGGGAUCGGGGAUCAGGAGUUGCAAAUUAGCAUAUGUAACAAGAUGUUGGC-AGAAGAGUAUAUG
...(((..(((((...((((((....))))))((((((..((((((((.....((((....))))....)))))))).......((....)).....)))))).))-)))...))).... ( -33.50)
>DroSim_CAF1 1021 119 - 1
AAUUGCAAUCUGCAAUGUUUUGGCAACAGGACGACGUCAACAGCUCCUCAAGACUCGGGAUCGGGGAUCAGGAGUUGCAAAUUAGCAUAUGUAACAAGAUGUUGGC-AGAAGAGUAUAUG
...(((..(((((...((((((....))))))((((((..((((((((.....((((....))))....)))))))).......((....)).....)))))).))-)))...))).... ( -36.40)
>DroYak_CAF1 1076 120 - 1
AAUUGCAGUUUGCAAUGUUUUGGCAACAGGACGACGUCAACAGCUCCUCAAGAUUUGGGCUCAAGGAUCAGGAGUUGUGAAUUAGCAUAUGUAACAAGAUGUUGGCCAGCGAAAGGUAUG
...(((..(((((...((((((....))))))((((((.(((((((((...(((((........))))))))))))))......((....)).....)))))).....)))))..))).. ( -36.30)
>consensus
AAUUGCAAUCUGCAAUGUUUUGGCAACAGGACGACGUCAACAGCUCCUCAAGACUCGGGAUCGGGGAUCAGGAGUUGCAAAUUAGCAUAUGUAACAAGAUGUUGGC_AGAAGAGUAUAUG
.(((((.....)))))((((((....))))))((((((..((((((((.....((((....))))....)))))))).......((....)).....))))))................. (-31.87 = -30.77 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:23 2006