| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,151,028 – 4,151,137 |
| Length | 109 |
| Max. P | 0.668610 |
| Location | 4,151,028 – 4,151,137 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 87.46 |
| Mean single sequence MFE | -44.03 |
| Consensus MFE | -32.62 |
| Energy contribution | -32.07 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.668610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4151028 109 + 23771897 CCAAGGCCGGGAAUUCUCCGGAGAAAGUGUGUG-----UGCAAGAGGCCGAGCCUCUCUCCCGAGAAGAGCGGCGAUUGUUGCUCUUAGCACCAUCACCUGUGCUUACCUGGCC ....(((((((..(((((.(((((...(((...-----.))).(((((...)))))))))).)))))(((((((....)))))))..(((((........)))))..))))))) ( -48.70) >DroSim_CAF1 655 105 + 1 CCAAGGCCGGGAAUUCUCCGGAGAAAGUGUGU-------GGCAGAGGCCGAGCCUCUCUCCCGAGAAGAGCGGCGAUCGUUUCUCUUAGCACCAUCACCUGU--UUACCUGGCC ....(((((((..(((((.(((((.((.((.(-------(((....)))).)))).))))).)))))((((((.(((.(((......)))...))).)).))--)).))))))) ( -42.60) >DroYak_CAF1 700 112 + 1 CCAAGGCCGGGAAUUCUCCGGAGAAAGUGUGUGGAAGGUGGAAGAGUUUGAGGCUCUCUCCCGCGAAGAGCGGCCAUCGAUUCUCUUAACACCAUCACCUGU--UUACCUGGCC ....(((((((..((((....))))((.((((((...((..(((((.((((((((((((.......)))).)))).))))..))))).)).))).)))))..--...))))))) ( -40.80) >consensus CCAAGGCCGGGAAUUCUCCGGAGAAAGUGUGUG_____UGGAAGAGGCCGAGCCUCUCUCCCGAGAAGAGCGGCGAUCGUUUCUCUUAGCACCAUCACCUGU__UUACCUGGCC ....(((((((......(.((.((..((((.........(..((((((...))))))..).....(((((.(((....))).))))).))))..)).)).)......))))))) (-32.62 = -32.07 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:22 2006