Locus 1427

Sequence ID 3L_DroMel_CAF1
Location 4,136,115 – 4,136,211
Length 96
Max. P 0.655379
window2218

overview

Window 8

Location 4,136,115 – 4,136,211
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -22.00
Consensus MFE -19.06
Energy contribution -18.58
Covariance contribution -0.48
Combinations/Pair 1.37
Mean z-score -1.43
Structure conservation index 0.87
SVM decision value 0.26
SVM RNA-class probability 0.655379
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4136115 96 - 23771897
AUUUGCAUAAGAUGCUGUGACCCAAAAAAAAAAAGAAAAAAGGAAUC-CUUCUGCCUUCAGGCAUCGGGCACAGGGAUUAGACGUCCUGAGAACAAA
..............(((((.(((................((((...)-))).((((....))))..))))))))((((.....)))).......... ( -22.00)
>DroSec_CAF1 12366 89 - 1
AUUUGCAUAAGAUGCUGUGACCCAAAAAAA-------AAAAGGAAUC-CUUCUGCCCUCAGGCAUCGGGCACAGGGAUUAGACGUCCUGAGAACAAA
..............(((((.(((.......-------..((((...)-))).((((....))))..))))))))((((.....)))).......... ( -21.30)
>DroSim_CAF1 13444 88 - 1
AUUUGCAUAAGAUGCUGUGACCCAAAAA-A-------AAAAGGAAUC-CUUCUGCCUUCAGGCAUCGGGCACAGGGAUUAGACGUCCUGAGAACAAA
..............(((((.(((.....-.-------..((((...)-))).((((....))))..))))))))((((.....)))).......... ( -22.00)
>DroEre_CAF1 14283 85 - 1
AUUUGCAUAAGAUGCUGUGACCCAAAAA-----------AAGGGAUC-CUUCUGCCUUCGGGCAUCGGGCGCAGGGAUUAGACGUCCUGAGAACAAA
..............(((((.(((.....-----------((((...)-))).((((....))))..))))))))((((.....)))).......... ( -24.70)
>DroYak_CAF1 12584 80 - 1
AUUUGCAUAAGAUGCUGUGACCCAAAAA-----------AAGGA------UCUGCCUUCGGGCAUCGGGCGCAGGGAUUAGACGUCCUGAGAACAAA
..............(((((.(((.....-----------...((------..((((....))))))))))))))((((.....)))).......... ( -20.50)
>DroAna_CAF1 14707 80 - 1
AUUUGCAUAAGAUUUUAGGGUAGGAC-----------------AGUCCGUACUGCCUUCUGGCAUCGGACUUAGGGAUUAGAUGUCCUGAGAACAAA
..........(.(((((((((((..(-----------------((((((...((((....)))).))))))...)..)))....)))))))).)... ( -21.50)
>consensus
AUUUGCAUAAGAUGCUGUGACCCAAAAA___________AAGGAAUC_CUUCUGCCUUCAGGCAUCGGGCACAGGGAUUAGACGUCCUGAGAACAAA
..............(((((.(((..................((((....))))(((....)))...))))))))((((.....)))).......... (-19.06 = -18.58 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:14 2006