| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,134,154 – 4,134,260 |
| Length | 106 |
| Max. P | 0.552256 |
| Location | 4,134,154 – 4,134,260 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.72 |
| Mean single sequence MFE | -39.67 |
| Consensus MFE | -28.62 |
| Energy contribution | -28.85 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4134154 106 - 23771897 ACUCACCCACACAGUUUCCUGGUUUUGUAUCAGGGCCGCGGCAAACGGUUCCACGUGGUUCUAUAAGGGGAGCCGCCGAGGUAUCCGGAAUGGGAGCUGGAGUGGU ......((((.((((((((((((.....))))(((((.((((..(((......)))((((((......)))))))))).)))..)).....))))))))..)))). ( -42.50) >DroPse_CAF1 10694 100 - 1 ACUAACCGACGCAAUUGCCGGGCUUGGUGUCCGGUCCACGGCAUACGGGUCCACGGAGCUCCACCAGCGGUGCUGCCGAGGUAACCGG------AGCACGCGUCGU ......((((((....(((((((.....))))))).....((...(((..((.((((((.((......)).))).))).))...))).------.))..)))))). ( -44.30) >DroSec_CAF1 10428 106 - 1 ACUCACCCACACAGUUUCCUGGUUUUGUAUCUGGUCCGCGACAAACGGUUCCCCGUGGUUCUAUAAGAGGAGCCGCCGAGGUUUCCGGAAUGGGAGCUGGAGUGGU ......((((.((((((((..........(((((.((.((.(..((((....))))((((((......))))))).)).))...)))))..))))))))..)))). ( -37.60) >DroSim_CAF1 11516 106 - 1 ACUCACCCAUACAGUUUCCUGGUUUUGUAUCUGGUCCGCGACAAACGGUUCCCCGUGGUUCUAUAAGAGGAGCCGCCGAGGUUUCCGGAAUGGGAGCUGGAGUGGU ......((((.((((((((..........(((((.((.((.(..((((....))))((((((......))))))).)).))...)))))..))))))))..)))). ( -35.80) >DroYak_CAF1 10667 106 - 1 ACUCACCCACACAAUUUCCUGGUUUUGUAUCUGGCCCACGGCAAUUGCUUCCCCGUGGUUCUAUCAACGGAGCCGCCGAUGUAUCCGGAAUGGGAGCUGGAGUGGU ......((((.((.(((((.((((((((....(..((((((...........))))))..).....)))))))).(((.......)))...))))).))..)))). ( -33.50) >DroPer_CAF1 9845 100 - 1 ACUAACCGACGCAAUUGCCGGGCUUGGUGUCCGGUCCACGGCAUACGGGUCCACGGAGCUCCACCAGCGGUGCUGCCGAGGUAACCGG------AGCACGCGUCGU ......((((((....(((((((.....))))))).....((...(((..((.((((((.((......)).))).))).))...))).------.))..)))))). ( -44.30) >consensus ACUCACCCACACAAUUUCCUGGUUUUGUAUCUGGUCCACGGCAAACGGUUCCACGUGGUUCUAUAAGCGGAGCCGCCGAGGUAUCCGGAAUGGGAGCUGGAGUGGU ......((((......(((.((((((...(((((.((.((((...((......)).((((((......)))))))))).))...)))))...))))))))))))). (-28.62 = -28.85 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:08 2006