Locus 1423

Sequence ID 3L_DroMel_CAF1
Location 4,131,725 – 4,131,844
Length 119
Max. P 0.500000
window2211

overview

Window 1

Location 4,131,725 – 4,131,844
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.90
Mean single sequence MFE -29.77
Consensus MFE -24.31
Energy contribution -23.88
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -1.50
Structure conservation index 0.82
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4131725 119 + 23771897
GAUUCCCAAUUGACAAUGUCAACGGGAUACGUUUUUAAUUUACCUUGAUUAAUGGCAUUUAUCAUUCUUGACUAGACGCGCGUCUAAUUGAGUCACAGAAUUCUCG-GACCCGAUGGAAU
.(((((...(((((...)))))((((....((..((((((......))))))..)).......((((((((((((((....)))).....))))).))))).....-..))))..))))) ( -28.70)
>DroSim_CAF1 8642 119 + 1
GAUUCCCAAUUGACAAUGUCAACGGGAUACGUUUUUAAUUUACCUUGAUUAAUGGCAUUUAUCAUUCUUGACUAGACGCGCGUCUAAUUGAGUCACAGAAUUCUCG-UACCCGAUGGAAU
.(((((...(((((...)))))((((.(((((..((((((......))))))..)).......((((((((((((((....)))).....))))).)))))....)-))))))..))))) ( -31.00)
>DroEre_CAF1 9983 119 + 1
GAUUCCCAAUUGACAAUGUCAACGGGAUUCGCU-UUAAUUUACCUUGAUUAAUGGCAUUUAUCAUUCUUGACUAGACGCGCGUCUAAUUGAGUCACAGAAUUCUCGGGACCAGAUCGGGA
((.((((..(((((...))))).)))).))(((-((((((......)))))).))).......((((((((((((((....)))).....))))).)))))((((((.......)))))) ( -30.90)
>DroYak_CAF1 8231 119 + 1
GAUUCCCAAUUGGCAAUGUCAACGGGAUCCGUU-UUAAUUUACCUUGAUUAAUGGCAUUUAUUAUUCUUGACUAGACGCUCGUCUAAUUGAGUCACAGAAUUCCCGGGACGAGAUCGAAU
...((((..(((((...))))).((((.((((.-.(((((......)))))))))........((((((((((((((....)))).....))))).)))))))))))))((....))... ( -28.50)
>consensus
GAUUCCCAAUUGACAAUGUCAACGGGAUACGUU_UUAAUUUACCUUGAUUAAUGGCAUUUAUCAUUCUUGACUAGACGCGCGUCUAAUUGAGUCACAGAAUUCUCG_GACCAGAUCGAAU
..((((...(((((...)))))(((((...(((.((((((......)))))).))).......((((((((((((((....)))).....))))).)))))))))).........)))). (-24.31 = -23.88 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:07 2006