Locus 1422

Sequence ID 3L_DroMel_CAF1
Location 4,130,404 – 4,130,516
Length 112
Max. P 0.643036
window2210

overview

Window 0

Location 4,130,404 – 4,130,516
Length 112
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 77.44
Mean single sequence MFE -22.31
Consensus MFE -14.81
Energy contribution -15.25
Covariance contribution 0.44
Combinations/Pair 1.19
Mean z-score -1.56
Structure conservation index 0.66
SVM decision value 0.23
SVM RNA-class probability 0.643036
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4130404 112 + 23771897
-------UAUAACAAUAUUAUCAAUAGAGAUUCUCUCUGUAUUCCAAUAAUUUCGUAUUCUCAAUGGGAGGCUGCUAUCUAUUAUAAUAAUCAGCGAAAGCUGUUUGCAGUGCUCGCAU
-------................((((((.....)))))).......................(((.((((((((................((((....))))...))))).))).))) ( -25.41)
>DroSec_CAF1 6929 106 + 1
-------------AAUAUUAGCACUAGAGAUUCUCUCUGUAUUCCAAUAAUUUCGUAUUCUCAAUUGAAGGCUGCUAUCUAUCUAUAUAAUCAGCGAAAGCUGUUUGCAGUGCUCGCAU
-------------.....(((((.(((((.....)))))...............((.(((......))).)))))))................((((..((((....))))..)))).. ( -23.00)
>DroSim_CAF1 6935 106 + 1
-------------AAUAUUAGCACUAGAGAUUCUCUCUGUAUUCCAAUAAUUUCGUAUUCUCAAUUGAAGGCUGCUAUCUAUCUAUAUAAUCAGCGAAAGCUGUUUGCAGUGCUCGCAU
-------------.....(((((.(((((.....)))))...............((.(((......))).)))))))................((((..((((....))))..)))).. ( -23.00)
>DroEre_CAF1 8713 112 + 1
GUAUUAAAACACCAAUAAUAACACUAGAGAUUCUCUCUGUAUUCCAAUAAUUACGUAUGCUUUAUGGAAGGCUGCUAUUU----AUACAAUCAGCGAAAGCUA---GCAGCACUCGCAU
........................(((((.....)))))..(((((.(((...........)))))))).((((((....----........(((....))))---)))))........ ( -21.40)
>DroYak_CAF1 6866 96 + 1
-------------------ACAAUUUCAAAACCUCUCCGUAUUCCAAUAAUUACGUAUGCUCAAUGGGAGGCUGCUAUCU----AUACAAUCAGCGAAAGCUACUGGCGGUACUCGCAU
-------------------..................((((..........))))........(((.((((((((((...----........(((....)))..))))))).))).))) ( -18.72)
>consensus
_____________AAUAUUAGCACUAGAGAUUCUCUCUGUAUUCCAAUAAUUUCGUAUUCUCAAUGGAAGGCUGCUAUCUAU__AUAUAAUCAGCGAAAGCUGUUUGCAGUGCUCGCAU
........................(((((.....)))))...........................((..(((((................((((....))))...)))))..)).... (-14.81 = -15.25 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:06 2006