Locus 1420

Sequence ID 3L_DroMel_CAF1
Location 4,127,538 – 4,127,633
Length 95
Max. P 0.724026
window2208

overview

Window 8

Location 4,127,538 – 4,127,633
Length 95
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.68
Mean single sequence MFE -44.05
Consensus MFE -22.06
Energy contribution -22.17
Covariance contribution 0.11
Combinations/Pair 1.12
Mean z-score -2.03
Structure conservation index 0.50
SVM decision value 0.41
SVM RNA-class probability 0.724026
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4127538 95 - 23771897
AGCCACAUAUGGACUGGCCCAGAAAGGUGUGGAACUCAUUG------------------GCC------UGGCCCUGGUACUCCUGCAUGAGCUGGGGACAGGAGGUCAGGGGCAGGCAG
..((((((.(((......))).....)))))).........------------------(((------((.(((((...(((((((....)).(....))))))..))))).))))).. ( -42.80)
>DroPse_CAF1 5315 113 - 1
AGCCGCAUAUGGACUGGCCCAGAAACGACCGAAAGUCGUUGGAGCCUGCCGACUGGCCGACC------UGGCUCUGGUACUCCUCCACCAGGUGGGAGCAGGAGGUCAGGGCCAGGCAG
.((((....(((...((((((...((((.(....)))))))).)))..)))..)))).(.((------((((((((...((((((..((....))..).)))))..))))))))))).. ( -52.40)
>DroEre_CAF1 4099 95 - 1
AGCCACAUAUGGACUGGCCCAGAAAGGUGUGGAACUCGUUG------------------CCC------UGGCCCUGGUACUCCUGCAAGAGCUGUGGACAGGAGGUCAGGGGCAGGCAG
..((((((.(((......))).....)))))).......((------------------((.------((.(((((...(((((((..........).))))))..))))).)))))). ( -38.60)
>DroYak_CAF1 4082 98 - 1
AGCCACAUAUGGACUGGCCCAGAAAGGUGUGGAACUCGUUGU---------------CCCCC------UGGCCCUGGUACUCCUGCAUGAGCUGGGGACAGGAGGUCAGGGGCAGGCAG
..((((((.(((......))).....)))))).......(((---------------(((((------(((((((.((.((((.((....)).)))))).)).)))))))))..)))). ( -43.00)
>DroAna_CAF1 4942 101 - 1
AACCACAUAUAGACUGGCCCAGAAAGGUGUUGAAAUCAUUG------------------CCCUGCCCCUGACCCUGAUACUCCUCCAUGAGCUGGGGGCAGGAGGUCAGAGGCAGGCAG
..(.((((.....(((...)))....)))).).......((------------------((.((((.((((((((......((((((.....))))))..)).)))))).)))))))). ( -35.10)
>DroPer_CAF1 4382 113 - 1
AGCCGCAUAUGGACUGGCCCAGAAACGACCGAAAGUCGUUGGAGCCUGCCGACUGGCCGACC------UGGCUCUGGUACUCCUCCACCAGGUGGGAGCAGGAGGUCAGGGCCAGGCAG
.((((....(((...((((((...((((.(....)))))))).)))..)))..)))).(.((------((((((((...((((((..((....))..).)))))..))))))))))).. ( -52.40)
>consensus
AGCCACAUAUGGACUGGCCCAGAAAGGUGUGGAACUCGUUG__________________CCC______UGGCCCUGGUACUCCUCCAUGAGCUGGGGACAGGAGGUCAGGGGCAGGCAG
.(((.........(((((((((..((........))..)))...............................((((...((((.((....)).)))).)))).)))))).....))).. (-22.06 = -22.17 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:04 2006