Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 435,774 – 435,864 |
Length | 90 |
Max. P | 0.996590 |
Location | 435,774 – 435,864 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 94.33 |
Mean single sequence MFE | -19.03 |
Consensus MFE | -15.92 |
Energy contribution | -15.96 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.15 |
Mean z-score | -1.68 |
Structure conservation index | 0.84 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 435774 90 + 23771897 AAGAAGUUGUAGACAAGCCAGGCAGACAGACAAACAAAUUAAGUCUGAAUGCUGUCAGCUUAAGAAGGCGAAGUACAAGAUCUUGAGAAA ((((..(((((((((.((.(..(((((...............)))))..))))))).((((....))))....)))))..))))...... ( -21.26) >DroSec_CAF1 16847 90 + 1 AAGAAGUUGUAGACAAGUCAGGCAGACAGACAAACAAAUUAAGUCUGAAUGCUGUCAGCUUAAGAAGUCGAAGUACAAGAUCUUGAGGAA ((((..((((((((((((..((((..(((((...........)))))..))))....)))).....)))....)))))..))))...... ( -18.60) >DroSim_CAF1 17069 90 + 1 AAGAAGUUGUAGACAAGUCAGGCAGACAGACAAACAAAUUAAGUCUGAAUGCUGUCAGCUUAAGAAGUCGAAGUACAAGAUCUUGAGGAA ((((..((((((((((((..((((..(((((...........)))))..))))....)))).....)))....)))))..))))...... ( -18.60) >DroEre_CAF1 18836 90 + 1 AAGAAGUUGUAGGCAAGUCAGGCCGACAGACAAACAAAUUAAGUCUGAAUGUUGUCAGCUUAGGAAGUCAAAGUACCAGAUCUUGAGGGA ..((..((.(((((..(((.....))).(((((....(((.......))).))))).))))).))..))......((.........)).. ( -16.70) >DroYak_CAF1 17372 89 + 1 AAGAAGUUGUAGACAAGUCAGGCAGACAGACAAACAAAUUAAGUCUGAAUGCUGUCAGCUUAAGAAGUCGAAGUACGAGAUCUUG-GAGA ...((((((..((....)).((((..(((((...........)))))..))))..))))))((((..(((.....)))..)))).-.... ( -20.00) >consensus AAGAAGUUGUAGACAAGUCAGGCAGACAGACAAACAAAUUAAGUCUGAAUGCUGUCAGCUUAAGAAGUCGAAGUACAAGAUCUUGAGGAA ((((..((((((((((((..(((((.(((((...........)))))....))))).)))).....)))....)))))..))))...... (-15.92 = -15.96 + 0.04)
Location | 435,774 – 435,864 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 94.33 |
Mean single sequence MFE | -20.06 |
Consensus MFE | -16.32 |
Energy contribution | -17.40 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.04 |
Mean z-score | -3.10 |
Structure conservation index | 0.81 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 435774 90 - 23771897 UUUCUCAAGAUCUUGUACUUCGCCUUCUUAAGCUGACAGCAUUCAGACUUAAUUUGUUUGUCUGUCUGCCUGGCUUGUCUACAACUUCUU ......((((..(((((....(((.......((.(((((((..((((.....))))..)).))))).))..))).....)))))..)))) ( -21.20) >DroSec_CAF1 16847 90 - 1 UUCCUCAAGAUCUUGUACUUCGACUUCUUAAGCUGACAGCAUUCAGACUUAAUUUGUUUGUCUGUCUGCCUGACUUGUCUACAACUUCUU ......((((..(((((....(((...(((.((.(((((((..((((.....))))..)).))))).)).)))...))))))))..)))) ( -22.00) >DroSim_CAF1 17069 90 - 1 UUCCUCAAGAUCUUGUACUUCGACUUCUUAAGCUGACAGCAUUCAGACUUAAUUUGUUUGUCUGUCUGCCUGACUUGUCUACAACUUCUU ......((((..(((((....(((...(((.((.(((((((..((((.....))))..)).))))).)).)))...))))))))..)))) ( -22.00) >DroEre_CAF1 18836 90 - 1 UCCCUCAAGAUCUGGUACUUUGACUUCCUAAGCUGACAACAUUCAGACUUAAUUUGUUUGUCUGUCGGCCUGACUUGCCUACAACUUCUU .....((((.((.((...........))...((((((((((..((((.....))))..))).)))))))..))))))............. ( -16.90) >DroYak_CAF1 17372 89 - 1 UCUC-CAAGAUCUCGUACUUCGACUUCUUAAGCUGACAGCAUUCAGACUUAAUUUGUUUGUCUGUCUGCCUGACUUGUCUACAACUUCUU ....-.((((..(((.....)))..))))..((.(((((((..((((.....))))..)).))))).))..................... ( -18.20) >consensus UUCCUCAAGAUCUUGUACUUCGACUUCUUAAGCUGACAGCAUUCAGACUUAAUUUGUUUGUCUGUCUGCCUGACUUGUCUACAACUUCUU ......((((..(((((....(((...(((.((.(((((((..((((.....))))..)).))))).)).)))...))))))))..)))) (-16.32 = -17.40 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:40 2006