Locus 1419

Sequence ID 3L_DroMel_CAF1
Location 4,123,036 – 4,123,136
Length 100
Max. P 0.827392
window2207

overview

Window 7

Location 4,123,036 – 4,123,136
Length 100
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -37.92
Consensus MFE -30.44
Energy contribution -30.68
Covariance contribution 0.24
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 0.80
SVM decision value 0.70
SVM RNA-class probability 0.827392
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4123036 100 + 23771897
CAUCGCGGUGGCCACACCCCCGUGUGUAUCUCCAAUUG-GGGAUCAAGUGGUCAGAGCCCAGAACCAGGGAGUUGCGUUAGACGCAGCCCCCA---GUUUUCUG
....((..(((((((..(((((..((......))..))-))).....)))))))..)).(((((...(((.((((((.....)))))).))).---...))))) ( -39.00)
>DroSec_CAF1 5698 100 + 1
CAUCGCGGUGGCCACACCCCCGUGUGUAUCUCCAUUUG-GGGAUCAAGUGGUCAGAGCCCAGAACCAGGGAGUUGCGUUAGACGCAGCCCCCA---GUUUUCUG
....((..(((((((..(((((.(((......))).))-))).....)))))))..)).(((((...(((.((((((.....)))))).))).---...))))) ( -40.90)
>DroSim_CAF1 5162 101 + 1
NNNNGCGGUGGCCACACCCCCGUGUGUAUCUCCAUUUAUGGGAUCAAGUGGUCAGAGCCCAGAACCAGGGAGUUGCGUUAGACGCAGCCCCCA---GUUUUCUG
....((..(((((((...((((((.((......)).)))))).....)))))))..)).(((((...(((.((((((.....)))))).))).---...))))) ( -37.30)
>DroEre_CAF1 4832 100 + 1
CAUCGGGGUGGCCACACCCCCGUGUGUACCUCCAUUUG-GGGAUCAAGUGGUCAAAGCCAAGAACCAGGGAGUUGCGAUAGACGUAGCCCCCA---GUUUUCUG
....((..(((((((..(((((.(((......))).))-))).....)))))))...)).(((((..(((.((((((.....)))))))))..---)))))... ( -36.50)
>DroYak_CAF1 5322 103 + 1
CAUCGUGGUGGCCACACCCCCGUGUGUAUCUCCAUUUG-GGGAUCAAGUGGUCAAAGCCAAGAAGCAGGGAGUUGCGAUAGACGUAGCCCCCAAAAGUUUUCUG
....((..(((((((..(((((.(((......))).))-))).....)))))))..))((..((((.(((.((((((.....)))))).)))....))))..)) ( -35.90)
>consensus
CAUCGCGGUGGCCACACCCCCGUGUGUAUCUCCAUUUG_GGGAUCAAGUGGUCAGAGCCCAGAACCAGGGAGUUGCGUUAGACGCAGCCCCCA___GUUUUCUG
....((..(((((((..(((((.(((......))).)).))).....)))))))..)).........(((.((((((.....)))))).)))............ (-30.44 = -30.68 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:03 2006