Locus 1417

Sequence ID 3L_DroMel_CAF1
Location 4,120,855 – 4,120,975
Length 120
Max. P 0.806174
window2204

overview

Window 4

Location 4,120,855 – 4,120,975
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -41.08
Consensus MFE -38.50
Energy contribution -38.94
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.39
Structure conservation index 0.94
SVM decision value 0.63
SVM RNA-class probability 0.806174
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4120855 120 - 23771897
AAUGUCAUUGCAGAUUCGCGCAAGAAGCAGUACUCGGUGCCGCGCAAGGAGCGCACCACAGAAAGCACCUACCAGAUGUCCCGCUGGACACCGGUGAUCAAGGACAUCAUGGAGGAUUGC
....((.((((........)))))).(((((....((((((.(....)..).)))))..........(((.((((((((((((((((...)))))).....))))))).))))))))))) ( -42.30)
>DroSec_CAF1 2474 120 - 1
AAUGUCAUUGCAGAUUCGCGCAAGAAGCAGUACUCGGUGCCGCGCAAGGAGCGCACCACAGAAAGCACCUACCAGAUGUCCCGCUGGACCCCGGUGAUCAAGGACAUCAUGGAGGAUUGC
....((.((((........)))))).(((((....((((((.(....)..).)))))..........(((.((((((((((((((((...)))))).....))))))).))))))))))) ( -42.30)
>DroSim_CAF1 2770 120 - 1
AAUGUCAUUGCAGAUUCGCGCAAGAAGCAGUACUCGGUGCCGCGCAAGGAGCGCACCACAGAAAGCACCUACCAGAUGUCCCGCUGGACCCCGGUGAUCAAGGACAUCAUGGAGGAUUGC
....((.((((........)))))).(((((....((((((.(....)..).)))))..........(((.((((((((((((((((...)))))).....))))))).))))))))))) ( -42.30)
>DroEre_CAF1 2670 120 - 1
AAUGUCAUUGCAGAUUCGCGAAAGAAGCAGUACUCGGUGCCGCGCAAGGAGCGGACCACAGAAAGCACCUACCAAAUGUCCCGCUGGACCCCGGUGAUCAAGGACAUCAUGGAGGAUUGU
.......((((......)))).....(((((....(((.((((.......)))))))..........(((.(((.((((((((((((...)))))).....))))))..))))))))))) ( -36.20)
>DroYak_CAF1 3120 120 - 1
AAUGUCAUUGCAGAUUCGCGCAAGAAGCAGUACUCGGUGCCGCGCAAGGAGCGCACCACAGAAAGCACCUACCAGAUGUCCCGCUGGACCCCGGUGAUCAAGGACAUCAUGGAGGAUUGC
....((.((((........)))))).(((((....((((((.(....)..).)))))..........(((.((((((((((((((((...)))))).....))))))).))))))))))) ( -42.30)
>consensus
AAUGUCAUUGCAGAUUCGCGCAAGAAGCAGUACUCGGUGCCGCGCAAGGAGCGCACCACAGAAAGCACCUACCAGAUGUCCCGCUGGACCCCGGUGAUCAAGGACAUCAUGGAGGAUUGC
....((.((((........)))))).(((((....((((((.(....)..).)))))..........(((.((((((((((((((((...)))))).....))))))).))))))))))) (-38.50 = -38.94 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:00 2006