Locus 1412

Sequence ID 3L_DroMel_CAF1
Location 4,114,023 – 4,114,128
Length 105
Max. P 0.964087
window2192

overview

Window 2

Location 4,114,023 – 4,114,128
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 74.50
Mean single sequence MFE -28.40
Consensus MFE -15.05
Energy contribution -15.69
Covariance contribution 0.64
Combinations/Pair 1.24
Mean z-score -2.19
Structure conservation index 0.53
SVM decision value 1.56
SVM RNA-class probability 0.964087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4114023 105 - 23771897
UAUUCCAAUGACGAGCCGCCCAAGCGGUUCUCGCUCUCCAUUGCCGGCAGCGAGAUAAAUAUCGAUGGGCCGGCCAAUCCCCAUCCGCCGCCCACUUCCAAACAA
...........((((((((....)))))(((((((..((......)).)))))))......))).(((((.(((............))))))))........... ( -32.70)
>DroVir_CAF1 18923 81 - 1
UAUUCCAAUGAUGAGCCGCCGAAGCGUUUUUCGCUAUCGAUAGCCGGCAGCGAGAUAAAUAUUGAUGGGCCAGCG---------------CCCAUU---------
.....(((((......(((....)))..(((((((..((.....))..)))))))....)))))((((((....)---------------))))).--------- ( -24.50)
>DroPse_CAF1 18075 87 - 1
UAUUCCAAUGAUGAGCCGCCCAAGCGGUUCUCCCUGUCCAUAGCCGGUGGCGACAUCAAUAUCGAUGGGCC------------------GCCCACUAGCAAACAA
.........((.(((((((....)))))))))..(((...(((..((((((..((((......)))).)))------------------)))..)))....))). ( -30.10)
>DroYak_CAF1 15967 105 - 1
UAUUCCAAUGACGAGCCGCCCAAGCGAUUCUCGCUCUCCAUCGCCGGCAGCGAGAUAAAUAUCGAUGGGCCGGCCAAUCCCAAUCCGCCGCCCACUUCCAAACAA
............(.((((((((..(((((((((((..((......)).))))))).....)))).)))).))))).............................. ( -28.60)
>DroMoj_CAF1 16902 84 - 1
UAUUCGAACGAUGAGCCGCCAAAGCGUUUUUCGCUAUCGAUAGCUGGCAGCGAAAUAAAUAUCGAUGGGCCAGCCCAU------------CCCACU---------
.........((((...(((....)))..(((((((..((.....))..)))))))....))))((((((....)))))------------).....--------- ( -24.00)
>DroPer_CAF1 16475 87 - 1
UAUUCCAAUGAUGAGCCGCCCAAGCGGUUCUCUCUGUCCAUAGCCGGUGGCGACAUCAAUAUCGAUGGGCC------------------GCCCACUAGCAAACAA
.........((.(((((((....)))))))))..(((...(((..((((((..((((......)))).)))------------------)))..)))....))). ( -30.50)
>consensus
UAUUCCAAUGAUGAGCCGCCCAAGCGGUUCUCGCUAUCCAUAGCCGGCAGCGAGAUAAAUAUCGAUGGGCC_GCC______________GCCCACU__CAAACAA
........(((((...(((....)))..(((((((..(.......)..)))))))....))))).(((((...................)))))........... (-15.05 = -15.69 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:48 2006