| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 432,221 – 432,316 |
| Length | 95 |
| Max. P | 0.845493 |
| Location | 432,221 – 432,316 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 85.04 |
| Mean single sequence MFE | -21.93 |
| Consensus MFE | -16.45 |
| Energy contribution | -16.32 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 432221 95 + 23771897 GAAUGCAUUGAUUAAAGUCAUACUUUUGUGGCAAAGAUAAAUACACUUGUCUAUCAGUUUUUGGGCAGUGAAUUAUUUAUUA---------------UCACUGCAAUAAC ...((((.((((....((((((....))))))...((((((((((((.(((((........)))))))))...)))))))))---------------))).))))..... ( -24.30) >DroSec_CAF1 13350 95 + 1 GAUUGCAUUAAUUGAAGUCAUAUUUUUGUGGGCAAGAUAAAUACACUUGUCUAUCAGUUUUUGGGCAGUGAAUUAUUUAUUA---------------UCACUGCAAUAAC .....((..((((((...((((....))))((((((.........))))))..))))))..)).(((((((...........---------------)))))))...... ( -22.30) >DroSim_CAF1 13540 95 + 1 GAAUGCAUUAAUUAAAGUCAUAUUUUUGUGGGCAAGAUAAAUACACUUGUCUAUCAGUUUUUGGGCAGUGAAUUAUUUAUUA---------------UCACUGCAAUAAC .................(((.(..((.(((((((((.........))))))))).))..).)))(((((((...........---------------)))))))...... ( -18.90) >DroYak_CAF1 13684 108 + 1 --AUGCAUUAAUUUAAAUCAUAUUUUUGUGGGCAAGAUCAAUACACUUGUCUAUCAGUUUCUAGGCAGUGAAUUAUUUAUUGGGACUUGUCUCAGCGUAACUGUAAUAAC --((((............((((....))))((((((.((((((((((.(((((........))))))))).......))))))..))))))...))))............ ( -22.21) >consensus GAAUGCAUUAAUUAAAGUCAUAUUUUUGUGGGCAAGAUAAAUACACUUGUCUAUCAGUUUUUGGGCAGUGAAUUAUUUAUUA_______________UCACUGCAAUAAC ...((((..........(((((....)))))....((((((((((((.(((((........)))))))))...))))))))....................))))..... (-16.45 = -16.32 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:38 2006