Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,100,534 – 4,100,625 |
Length | 91 |
Max. P | 0.921420 |
Location | 4,100,534 – 4,100,625 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 71.71 |
Mean single sequence MFE | -14.11 |
Consensus MFE | -10.76 |
Energy contribution | -11.04 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -1.09 |
Structure conservation index | 0.76 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4100534 91 + 23771897 UUUGUGUGCUUAA--UGAAGGUGAAUGCACUUUGCACACACAAUAUGUAUUUAUACCACUCCAACUA---AUUCCAGCAACCCAAUCCCUUCCCGA ..(((((((....--..((((((....)))))))))))))...........................---.......................... ( -13.00) >DroSec_CAF1 2048 89 + 1 UUUGUGUGCUCAA--UGGAGGUGAAUGCACUUUGCACACAAAAUAUGUAU-UAUCCCACUCCAACUA---ACUCCAACAAC-CAAUCCCUUUCCGA (((((((((....--..((((((....)))))))))))))))........-................---...........-.............. ( -15.30) >DroSim_CAF1 1959 90 + 1 UUUGUGUGCUCCA--UGGAGGUGAAUGCACUUUGCACACAUAAUACGGAU-UAUCCCACUCCAACUA---AUUCCACCAACCCAAUCCCUUUCCGA ..(((((((....--..((((((....))))))))))))).....((((.-................---.....................)))). ( -16.36) >DroEre_CAF1 1961 78 + 1 UUUGUGUACUUAA--UGGAGGUGAAUGCACCUUGCACACAU-------AU-UACCCCACACCAUCUA---AGUUCAAC-----ACUCCCUUUUCGA ...((((((((((--((((((((....)))))((....)).-------..-.........)))).))---)))...))-----))........... ( -13.90) >DroAna_CAF1 1843 85 + 1 UGUGUGUACUUUGUUUUGAGGUGAAUGCACUUUGCCCACAUU-UAAG----UAUC-CCCUCCUUCUAUAGAGCUCUA---CUGGAUCUCCCCCU-- ...(..(((((.....((.((..((.....))..))))....-.)))----))..-)......(((((((....)))---.)))).........-- ( -12.00) >consensus UUUGUGUGCUUAA__UGGAGGUGAAUGCACUUUGCACACAUAAUAUG_AU_UAUCCCACUCCAACUA___AGUCCAACAAC_CAAUCCCUUUCCGA ..(((((((........((((((....)))))))))))))........................................................ (-10.76 = -11.04 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:45 2006