Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,098,202 – 4,098,295 |
Length | 93 |
Max. P | 0.985632 |
Location | 4,098,202 – 4,098,295 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 98.57 |
Mean single sequence MFE | -17.00 |
Consensus MFE | -16.50 |
Energy contribution | -16.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.97 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4098202 93 + 23771897 CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA ((.-..(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))....))....... ( -17.00) >DroSec_CAF1 4229 93 + 1 CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA ((.-..(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))....))....... ( -17.00) >DroSim_CAF1 4203 93 + 1 CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUAAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA ((.-..(((((((((((.....((..((((((((((((..........))))))))))))..))...)))))))...))))....))....... ( -17.50) >DroEre_CAF1 4256 93 + 1 CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA ((.-..(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))....))....... ( -17.00) >DroYak_CAF1 4246 93 + 1 CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA ((.-..(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))....))....... ( -17.00) >DroAna_CAF1 26733 94 + 1 CCUGAAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUCUGAAUACAA ......(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))............. ( -16.50) >consensus CCU_AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA ......(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))............. (-16.50 = -16.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:44 2006