| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,095,108 – 4,095,210 |
| Length | 102 |
| Max. P | 0.544669 |
| Location | 4,095,108 – 4,095,210 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.31 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -16.39 |
| Energy contribution | -17.12 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4095108 102 - 23771897 GAAUAUGAAUUACAAAUAUAAACAA------CAAGGGGAACCUACUUGAGAGCAGCAAAAGUGGGUCGCUCUGCUGGAGUUUUAUCCCAGCAUUGCAGCAUCAUAGCA ...(((((.................------......((.(((((((...........)))))))))((..((((((.(......)))))))..))....)))))... ( -25.50) >DroSec_CAF1 1128 102 - 1 GAAUAUGAAAUAUAAAUAUGAACAA------UAAGGGGAACCUACUUGAGAGCAGCAAAAGUGGGUCGCUCUGCUGGAGUUUUAUCCCAGCAUUGCAGCAUCAUAGCA ................(((((....------......((.(((((((...........)))))))))((..((((((.(......)))))))..))....)))))... ( -25.50) >DroSim_CAF1 1098 102 - 1 GAAUAUGAAAUAUAAAUAUAAACAA------CAAGGGAAACCUACUUGAGAGCAGCAAAAGUGGGUCGCUCUGCUGGAGUUUUAUCCCAACAUUGCAGCAUCAUAGCA ...(((((..............(((------..(((....)))..)))...((.((((...((((..((((.....)))).....))))...)))).)).)))))... ( -26.70) >DroEre_CAF1 1078 98 - 1 GAAUAUAAAUAAGAAAUGAUU---A-------AAAGGAAACAUACUUGAGAGCAGCAAAUGUGGGUCGCUCUGCUGGCGUUUUAUCCCAGCAUUGCAGCAUCAUAGCA ............(..(((((.---.-------....((..((((.(((.......))).))))..))((..((((((.(......)))))))..))...)))))..). ( -22.70) >DroYak_CAF1 1098 99 - 1 GAAUAUAAAUUACAAAUGAAU---A------CAAAGGAAACAUACUUGAGAGCAGCAAAUGUGGGUCGCUCUGCAGGCGUUUUAUCCCAGCAUUGCAGCAUCAUAGCA ...............((((..---.------....(....)..........((.((((.((((((.((((.....))))......)))).)))))).)).)))).... ( -20.10) >DroMoj_CAF1 1089 104 - 1 AA----AGAUUAGCAAUAGAUAAAGUGGAUCUAAGCAUAACCUACUUGAGUGCUGCGAACGUGGGCCGUUCUGCUGGCGUCUUGUCCCAGCAUUGAAGCAUCAUGGCA ..----(((((.((..........)).)))))..((........(((.(((((((.((((((.(((......))).))))....)).))))))).))).......)). ( -26.96) >consensus GAAUAUAAAUUACAAAUAUAAACAA______CAAGGGAAACCUACUUGAGAGCAGCAAAAGUGGGUCGCUCUGCUGGAGUUUUAUCCCAGCAUUGCAGCAUCAUAGCA .................................(((....))).....(((((.((........)).)))))(((((.(......))))))......((......)). (-16.39 = -17.12 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:43 2006