Locus 1405

Sequence ID 3L_DroMel_CAF1
Location 4,091,916 – 4,092,033
Length 117
Max. P 0.563944
window2181

overview

Window 1

Location 4,091,916 – 4,092,033
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -36.06
Consensus MFE -27.72
Energy contribution -29.12
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.77
SVM decision value 0.06
SVM RNA-class probability 0.563944
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4091916 117 - 23771897
UCGAUCGUUUCACGUUUUUGCACAAUUUCACAC--ACACACGCAUUCGCUGCACGGCCGUUUGGGUCUGGGUGUAUGUGUGCGUGUGUACGAAUCGAAAUGCACGAAA-AAAACAGCAAC
((((((((.....((....))........((((--((.(((((((.((((.((.((((.....)))))))))).))))))).))))))))).)))))..(((......-......))).. ( -37.00)
>DroSec_CAF1 35994 117 - 1
UCGAUCGUUUCACGUUUUUGCACAAUUUCACAC--ACACACGCAUUCGCUGCACGGCCGUUUGGGUCUGGGUGGAUGUGUGCGUGUGUACGAAUCGAAAUGCACGAAA-AAAACAGCAAC
((((((((.....((....))........((((--((.((((((((((((.((.((((.....)))))))))))))))))).))))))))).)))))..(((......-......))).. ( -40.90)
>DroSim_CAF1 36312 117 - 1
UCGAUCGUUUCACGUUUUUGCACAAUUUCACAC--ACACACGCAUUCGCUGCACGGCCGUUUGGGUCUGGGUGUAUGUGUGCGUGUGUACGAAUCGAAAUGCACGAAA-AAAACAGCAAC
((((((((.....((....))........((((--((.(((((((.((((.((.((((.....)))))))))).))))))).))))))))).)))))..(((......-......))).. ( -37.00)
>DroEre_CAF1 36763 118 - 1
CCGAUCGUUACACGUUUUUGCACAAUUCCACACACACACACGCAUUCGCUGCACGGCCGUUUGCGUCUGGGUGUAUGUGUGCGUGUGAACGAAUCGAAAUGCACGAAU--AAACAGCUAC
.((((((((((((((....(((((.....((((...((.(((((..((((....)).))..))))).)).)))).)))))))))))).))).))))............--.......... ( -35.50)
>DroYak_CAF1 37444 118 - 1
UUGAUCGUUACACGUUUUUGCACAAUUUCACAC--ACACACGCAUUCGCUGCACGGCCGUUUGAGUCUAGGUGUAUGUGUGCGUGUGUACGAAUCGAAAUGCACGAAAAAAAACAGCAAA
((((((((.....((....))........((((--((.(((((((.((((....(((.......)))..)))).))))))).))))))))).)))))..(((.............))).. ( -29.92)
>consensus
UCGAUCGUUUCACGUUUUUGCACAAUUUCACAC__ACACACGCAUUCGCUGCACGGCCGUUUGGGUCUGGGUGUAUGUGUGCGUGUGUACGAAUCGAAAUGCACGAAA_AAAACAGCAAC
......((((....(((.((((...((((......((((((((((.((.(((((((((.....))))...))))))).)))))))))).......)))))))).)))...))))...... (-27.72 = -29.12 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:38 2006