Locus 1403

Sequence ID 3L_DroMel_CAF1
Location 4,087,788 – 4,087,896
Length 108
Max. P 0.663981
window2179

overview

Window 9

Location 4,087,788 – 4,087,896
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.37
Mean single sequence MFE -41.48
Consensus MFE -31.09
Energy contribution -32.15
Covariance contribution 1.06
Combinations/Pair 1.19
Mean z-score -2.74
Structure conservation index 0.75
SVM decision value 0.27
SVM RNA-class probability 0.663981
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4087788 108 + 23771897
------------AAGAUGAUUCAUGUGGGCGAAAAUACGUGGAACCUGCGGAUCCUCAUCACGGAUCUGCAGGUGGAGAAGACGCUGCGCGUGAAGGGUGACCAGCACAUUGGCGGCGUA
------------.......((((((((........))))))))((((((((((((.......)))))))))))).......(((((((..(((..((....))..)))....))))))). ( -48.10)
>DroVir_CAF1 34981 108 + 1
------------AAGAUGAUUCAUGUGGGCGAAAACACCUGGAACCUGCGGAUACUUAUCACAGAUCUGCAGGUGGAGAAAACGUUGCGUGUGCGCGGUGACCAGCACAUUGGCGGCGUC
------------.......((((.(((........))).))))((((((((((.((......)))))))))))).......(((((((((((((..(....)..))))))..))))))). ( -40.00)
>DroEre_CAF1 32701 108 + 1
------------AAGAUGAUUCAUGUGGGAGAAAAUACGUGGAACCUGCGGAUCCUCAUCACGGAUCUGCAGGUGGAAAAGACGCUGCGCGUGAAGGGUGACCAGCACAUUGGAGGCGUA
------------.......((((((((........))))))))((((((((((((.......)))))))))))).......(((((....(((..((....))..)))......))))). ( -43.20)
>DroYak_CAF1 33266 108 + 1
------------AAGAUGAUUCAUGUGGGCGAAAAUACGUGGAACCUGCGGAUCCUCAUCACGGAUCUGCAGGUGGAGAAGACGCUGCGCGUGAAGGGUGACCAGCACAUUGGAGGCGUA
------------.......((((((((........))))))))((((((((((((.......)))))))))))).......(((((....(((..((....))..)))......))))). ( -43.20)
>DroMoj_CAF1 36912 108 + 1
------------ACGAUGAUUCAUGUGGGCGAGAACACCUGGAACCUGCGGAUAUUCAUCACAGAUCUGCAGGUGGAGAAAACGUUGCGUGUGCGCGGUGACCAGCAUAUUGGCGGCGUC
------------.......((((.(((........))).))))((((((((((...........)))))))))).......(((((((((((((..(....)..))))))..))))))). ( -36.70)
>DroAna_CAF1 29225 120 + 1
CAUAUAGCCGCCAAGAUGAUUCAUGUGGGCGAAAAUACGUGGAACCUGCGGAUUCUCAUCACAGACCUACAGGUGGAAAAGACCUUGAGGGUGAAAGGUGACCAGCACAUUGGUGGCGUC
......(((((((((((((((((((((........)))))))).((...))....))))).....(((..((((.......))))..)))(((...(....)...))).))))))))... ( -37.70)
>consensus
____________AAGAUGAUUCAUGUGGGCGAAAAUACGUGGAACCUGCGGAUCCUCAUCACAGAUCUGCAGGUGGAGAAGACGCUGCGCGUGAAGGGUGACCAGCACAUUGGCGGCGUA
...................((((((((........))))))))((((((((((((.......)))))))))))).......(((((((..(((...((...))..)))....))))))). (-31.09 = -32.15 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:35 2006