Locus 1402

Sequence ID 3L_DroMel_CAF1
Location 4,076,387 – 4,076,482
Length 95
Max. P 0.765949
window2178

overview

Window 8

Location 4,076,387 – 4,076,482
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 75.40
Mean single sequence MFE -26.54
Consensus MFE -9.44
Energy contribution -12.76
Covariance contribution 3.32
Combinations/Pair 1.14
Mean z-score -1.91
Structure conservation index 0.36
SVM decision value 0.52
SVM RNA-class probability 0.765949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4076387 95 - 23771897
AAGCAGCUCAAGCGGUUAUGCACUGCUUGCCACGGUUGAAGCAGUGAAACGGUUCCUCAAGCUUACGUGGUAAAGCAGUGUAUUCAAAUUGUACG
...........(((((((((((((((((((((((....((((..(((.........))).)))).)))))).)))))))))))...))))))... ( -33.00)
>DroSec_CAF1 20542 94 - 1
AAGCAGCUCAAGCGGUUAUGCACUGCUUUUCGCUCGUGAAGCAGUGAAACGGUUUCGCAAGCGUA-GUGAUUAAGCAGUGCAUUCAAAUUUGACG
.....(.(((((.....(((((((((((..((((.(((((((.(.....).))))))).))))..-......))))))))))).....)))))). ( -32.80)
>DroSim_CAF1 20657 92 - 1
AAGCAGCUCAAGCGGUUAUGCACUGCUUUUCGCUCUUAAAGCAGUGAAACGGUU--GAAAGCUUA-GAGAUCAAGCAGUGCAUUCAAAUUUGACG
.....(.(((((.....(((((((((((....((((..((((..(.((....))--.)..)))))-)))...))))))))))).....)))))). ( -26.70)
>DroEre_CAF1 21362 85 - 1
AAGCAGUGCAAGCGGUU----------UUUUGCGGUUAAUGGUGUGAAACGGUUCUACAAGUUUAACUGGUAAAGCAGUGCAUUCAAAGUAUAUG
..(((.(((..((((..----------..))))((((((...((((((....))).)))...))))))......))).))).............. ( -20.20)
>DroYak_CAF1 21308 85 - 1
AAGCAGUGCAAGCGGGC----------UGUUGCGGUUAAAGCAGUGAAACGGUUCUACAAGUUUAACUGGUGAAGCAGUGCAUUCAAAUUUUAUG
..(((.(((....((((----------((((((.......))).....)))))))(((.((.....)).)))..))).))).............. ( -20.00)
>consensus
AAGCAGCUCAAGCGGUUAUGCACUGCUUUUCGCGGUUAAAGCAGUGAAACGGUUCCACAAGCUUA_GUGGUAAAGCAGUGCAUUCAAAUUUUACG
..(((.....(((.(((...(((((((((........))))))))).))).)))......((((........))))..))).............. ( -9.44 = -12.76 +   3.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:34 2006