Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,074,138 – 4,074,242 |
Length | 104 |
Max. P | 0.880451 |
Location | 4,074,138 – 4,074,242 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -40.45 |
Consensus MFE | -32.96 |
Energy contribution | -34.01 |
Covariance contribution | 1.05 |
Combinations/Pair | 1.21 |
Mean z-score | -2.27 |
Structure conservation index | 0.81 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4074138 104 + 23771897 GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA------GGGGAUCGCUCCCGAUGGAGGCGC-UAAAUC ((((.((....)).))))...(((((((.((((....)))).)))(((((...(((((((((((..........------)))))))))))....)))))))))-...... ( -44.70) >DroVir_CAF1 21938 85 + 1 AACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUUUUCACCUGAGCCCA---CAGCU-----------------------UAGAUGAAGGUACAUAAAUC ....(((((((((((............))))....)))))))((((((((.((((((...---..)))-----------------------))).)))))).))....... ( -24.80) >DroSim_CAF1 18469 104 + 1 GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA------GGGGAUCGCUCCCGAUGGAGGCGC-UAAAUC ((((.((....)).))))...(((((((.((((....)))).)))(((((...(((((((((((..........------)))))))))))....)))))))))-...... ( -44.70) >DroEre_CAF1 19227 104 + 1 GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA------GGGGAUCGCUCCCGAUGGAGGCGC-UAAAUC ((((.((....)).))))...(((((((.((((....)))).)))(((((...(((((((((((..........------)))))))))))....)))))))))-...... ( -44.70) >DroYak_CAF1 19117 104 + 1 GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA------GGGGAUCGCUACCGAUGGAGGCGC-UAAAUC ((((.((....)).))))...(((((((.((((....)))).)))(((((....((((((((((..........------)))))))))).....)))))))))-...... ( -42.50) >DroAna_CAF1 17731 110 + 1 GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGUUGAGGGGUUCCAGUCUCUUCAAACGGAUGAGGAUCCCUCGCGAUGGAGGUGC-UAGAUC ..(((((((((((((....(..(......)..)....))))))))(((((..((((((((((..((((........))))..))))))))))...)))))..))-)))... ( -41.30) >consensus GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA______GGGGAUCGCUCCCGAUGGAGGCGC_UAAAUC ((((.((....)).))))...(((((((.((((....)))).)))(((((...(((((((((((................)))))))))))....)))))))))....... (-32.96 = -34.01 + 1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:33 2006