Locus 1400

Sequence ID 3L_DroMel_CAF1
Location 4,073,038 – 4,073,131
Length 93
Max. P 0.993377
window2176

overview

Window 6

Location 4,073,038 – 4,073,131
Length 93
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 83.81
Mean single sequence MFE -20.27
Consensus MFE -15.66
Energy contribution -16.48
Covariance contribution 0.81
Combinations/Pair 1.06
Mean z-score -2.93
Structure conservation index 0.77
SVM decision value 2.39
SVM RNA-class probability 0.993377
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4073038 93 - 23771897
CUUCUGGCGACUUCGAGUGCCAUUUAUACUUAACAUAUUUGGCACUUGACAAAC---UACUGCACACACGCCACAAAAGUCGAGUCACGAAUCAUU
.(((((((((((((((((((((..(((.......)))..)))))))))).....---....((......))......))))..)))).)))..... ( -24.10)
>DroSec_CAF1 17257 89 - 1
CUUCAGGCGUCUUGGAGUGCCAUUUAUACUUAACAUAUUUGGCACUUGACAAA----AACAGCACACACGCCACAAAA---AAGUCGAGAAUCACC
.(((.((((((...((((((((..(((.......)))..)))))))))))...----....((......)).......---..)))..)))..... ( -19.90)
>DroSim_CAF1 17404 88 - 1
CUUCACGCGACUUGGAGUGCCAUUUAUACUUAACAUAUUUGGCACUUGACAAA----AACAGCACACACGCCACAAA----AAGUCGAGAAUCACC
.(((...((((((.((((((((..(((.......)))..))))))))......----....((......))......----)))))).)))..... ( -21.60)
>DroEre_CAF1 18183 91 - 1
CUUCAGGCCACCUCGAGUACCAUUUAUACUUAACAUAUUUGGCACUUGACAAAUAAAAACAGCACACACGCCAUAAU-----AGCCGCAUAUCACA
.....(((....((((((.(((..(((.......)))..))).))))))............((......))......-----.))).......... ( -15.50)
>consensus
CUUCAGGCGACUUCGAGUGCCAUUUAUACUUAACAUAUUUGGCACUUGACAAA____AACAGCACACACGCCACAAA____AAGUCGAGAAUCACC
.....(((....((((((((((..(((.......)))..))))))))))............((......))............))).......... (-15.66 = -16.48 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:32 2006