Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 49,650 – 49,770 |
Length | 120 |
Max. P | 0.699315 |
Location | 49,650 – 49,770 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -36.03 |
Consensus MFE | -33.57 |
Energy contribution | -33.90 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.93 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 49650 120 - 23771897 AAGACCCACGACCUCGUCGAUCGUCUUCAACGCGGUUCUGUUGUAUAAUGGCCGAUCUUUAUUGGCAAUUGGCGACGGUGACUGUGAAUUUUUCACUGCACUGCGAUAAUAACUUGGAGC .....(((.((((.(((.((......)).))).))))..(((((.((((.((((((....)))))).)))).((.(((((...((((.....))))..)))))))...))))).)))... ( -32.70) >DroSec_CAF1 39831 120 - 1 AAGACCCACGACCUCGUCGAUCGUCUUCAACGCGUUCCUGUUGUAUAAUUGCCGAUCUUUAUUGGCAAUUGGCGACGGUGACUGUGAAUUUUUCACUGCACUGCGAUAAUAACUUAUAGC (((((...((((...))))...)))))...(((((..(((((((.(((((((((((....))))))))))))))))))..)).((((.....))))......)))............... ( -36.70) >DroSim_CAF1 41182 120 - 1 AAGACCCACGACCUCGUCGAUCGUCUUCAACGCGUUCCUGUUGUAUAAUUGCCGAUCUUUCUUGGCAAUUGGCGACGGUGACUGUGAAUUUUUCACUGCACUGCGAUAAUAACUUGGAGC (((((...((((...))))...)))))......(((((.(((((.((((((((((......)))))))))).((.(((((...((((.....))))..)))))))...)))))..))))) ( -38.70) >consensus AAGACCCACGACCUCGUCGAUCGUCUUCAACGCGUUCCUGUUGUAUAAUUGCCGAUCUUUAUUGGCAAUUGGCGACGGUGACUGUGAAUUUUUCACUGCACUGCGAUAAUAACUUGGAGC (((((...((((...))))...)))))...(((......(((((.((((((((((......)))))))))))))))((((...((((.....))))..)))))))............... (-33.57 = -33.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:54 2006