Locus 1395

Sequence ID 3L_DroMel_CAF1
Location 4,060,562 – 4,060,660
Length 98
Max. P 0.836797
window2167

overview

Window 7

Location 4,060,562 – 4,060,660
Length 98
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 78.91
Mean single sequence MFE -26.82
Consensus MFE -14.33
Energy contribution -14.66
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.53
SVM decision value 0.74
SVM RNA-class probability 0.836797
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4060562 98 + 23771897
AAUGGGGGGAGGGAUGCGGAAGGU--C-----CUGGCAAGUGCCAUAAAUUGUGGCAAUUUCAGGCCGCAGCACUUUAAUUGAAUUCAAAAGAGCGAGG-A---CAACC
..........((....(....)((--(-----((.((((((((.......((((((........))))))))))))...(((....)))....)).)))-)---)..)) ( -29.31)
>DroPse_CAF1 4675 91 + 1
-------------AUGGGGGAGGU--CUCUCCACGGCAAGUGCCAUAAAUUGUGGCAAUUUCAGGCCGCAGCACUUUAAUUGAAUUCAAAAGCGAGAGACA---CAACC
-------------..((..(..((--(((((....((((((((.......((((((........))))))))))))...(((....)))..))))))))).---)..)) ( -28.61)
>DroGri_CAF1 5371 75 + 1
-------------GGGCAGAA--------------GCAAGUGCCAUAAAUUGUGGCAAUUUCAAGCCGCAGCACUUUAAUUGAAUUCAAA---GCGAGC-G---CAACC
-------------(.((....--------------((((((((.......((((((........))))))))))))...(((....))).---))..))-.---).... ( -19.81)
>DroEre_CAF1 4943 82 + 1
----------------CGGAAGGU--C-----CUGGCAAGUGCCAUAAAUUGUGGCAAUUUCAGGCCGCAGCACUUUAAUUGAAUUCAAAAGAGCGAGG-A---CAACC
----------------(....)((--(-----((.((((((((.......((((((........))))))))))))...(((....)))....)).)))-)---).... ( -28.41)
>DroAna_CAF1 4504 92 + 1
-----------GGAUGAAGGACGUGGC-----ACGGCAAGUGCCAUAAAUUGUGGCAAUUUCAGGCCGCAGCACUUUAAUUGAAUUCAAAAGAGCGAAG-ACGACAACC
-----------((.(((((..((((((-----((.....)))))))....((((((........)))))))..))))).(((..(((........))).-.)))...)) ( -26.20)
>DroPer_CAF1 4699 91 + 1
-------------AUGGGGGAGGU--CUCUCCACGGCAAGUGCCAUAAAUUGUGGCAAUUUCAGGCCGCAGCACUUUAAUUGAAUUCAAAAGCGAGAGACA---CAACC
-------------..((..(..((--(((((....((((((((.......((((((........))))))))))))...(((....)))..))))))))).---)..)) ( -28.61)
>consensus
_____________AUGCGGAAGGU__C_____ACGGCAAGUGCCAUAAAUUGUGGCAAUUUCAGGCCGCAGCACUUUAAUUGAAUUCAAAAGAGCGAGG_A___CAACC
...................................((((((((.......((((((........))))))))))))...(((....)))....)).............. (-14.33 = -14.66 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:24 2006