| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,054,708 – 4,054,807 |
| Length | 99 |
| Max. P | 0.993473 |
| Location | 4,054,708 – 4,054,807 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.07 |
| Mean single sequence MFE | -31.38 |
| Consensus MFE | -21.32 |
| Energy contribution | -24.07 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4054708 99 + 23771897 AUUAACA----UUUCUAACAGUGCAUGUGUACUGUGAGCAGACAGAGUGUUUUCUGCCAGGGUGGGUGGCCCACCCCAACCCGCCGUCUGCCCUUCGC--------UAGUC .......----......(((((((....)))))))..((((((((((....)))).....(((((((((......)).))))))))))))).......--------..... ( -35.10) >DroSec_CAF1 8889 99 + 1 AUUAACA----UUUCUAACAGUGCAUGUGUACUGUGAGCAGACAGAGUGUUUUCUACCAGGGUGGGUGGCUCACCCCAACCCGCCGUCUGCCCUUCGC--------UAGCC .......----......(((((((....)))))))..((((((((((....)))).....(((((((((......)).))))))))))))).......--------..... ( -35.10) >DroSim_CAF1 8766 79 + 1 ------------------------AUGUGUACUGUGAGCAGACAGAGUGUUUUCUGCCAGGGUGGGUGGCACACCCCAACCCGCCGUCUGCCCUUCGC--------UAGCC ------------------------.......((((((((((((((((....)))).....(((((((((......)).)))))))))))))...))))--------.)).. ( -29.20) >DroEre_CAF1 9006 97 + 1 GUUAACA----UUUCUGACAGUGCAUUUGUACUCCGAGCAGACAGAG--UUUUCUGCCAGGGUGGGUGGCCCACCCCACCCCGCCGUCUGCCCUUCGC--------UAGUC .......----.....((((((((....))))).(((((((((((..--....))((..(((((((.(.....)))))))).)).))))))...))).--------..))) ( -32.30) >DroYak_CAF1 9566 99 + 1 UUGUACUUC--UUUCUGACAGUGCAUUUGUACUGCGAGCAGACAGAG--UUUUCUGCCAGGGUGGGUGGCCCAGUCCACCCCGCCGUCUGCCCUUCAC--------UAGUC .........--.....(.((((((....)))))))(.((((((((..--....)).....(((((((((......))).)))))))))))).).....--------..... ( -31.90) >DroAna_CAF1 9113 99 + 1 UUAUUCCUCAAUUGUUUACAGUGCCUGCUCUCUGUAUGCAGACACAA--UUUUCUGCCAGGGUGGGUGGCCGA----------CAGUCUGCUGUGCAAAUGUUGUGUGUUC ...........((((.(((((.(....)...))))).))))((((((--(....((((((.(.((.((.....----------)).))).))).)))...))))))).... ( -24.70) >consensus AUUAACA____UUUCUAACAGUGCAUGUGUACUGUGAGCAGACAGAG__UUUUCUGCCAGGGUGGGUGGCCCACCCCAACCCGCCGUCUGCCCUUCGC________UAGUC ..................((((((....))))))...((((((((((....)))).....(((((((((......))).)))))))))))).................... (-21.32 = -24.07 + 2.75)
| Location | 4,054,708 – 4,054,807 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 72.07 |
| Mean single sequence MFE | -34.98 |
| Consensus MFE | -20.74 |
| Energy contribution | -22.80 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.59 |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.993473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4054708 99 - 23771897 GACUA--------GCGAAGGGCAGACGGCGGGUUGGGGUGGGCCACCCACCCUGGCAGAAAACACUCUGUCUGCUCACAGUACACAUGCACUGUUAGAAA----UGUUAAU ...((--------(((..((((((((((.(.((..(((((((...)))))))..))........).))))))))))(((((.(....).)))))......----))))).. ( -41.60) >DroSec_CAF1 8889 99 - 1 GGCUA--------GCGAAGGGCAGACGGCGGGUUGGGGUGAGCCACCCACCCUGGUAGAAAACACUCUGUCUGCUCACAGUACACAUGCACUGUUAGAAA----UGUUAAU ...((--------(((..((((((((((((((.((((........)))).))))((.....))...))))))))))(((((.(....).)))))......----))))).. ( -34.40) >DroSim_CAF1 8766 79 - 1 GGCUA--------GCGAAGGGCAGACGGCGGGUUGGGGUGUGCCACCCACCCUGGCAGAAAACACUCUGUCUGCUCACAGUACACAU------------------------ .....--------((...(((((((((.((((.((((........)))).)))).)(((......)))))))))))...))......------------------------ ( -30.40) >DroEre_CAF1 9006 97 - 1 GACUA--------GCGAAGGGCAGACGGCGGGGUGGGGUGGGCCACCCACCCUGGCAGAAAA--CUCUGUCUGCUCGGAGUACAAAUGCACUGUCAGAAA----UGUUAAC (((..--------(((..(((((((((.(((((((((........))))))))).)(((...--.)))))))))))(.....)...)))...))).....----....... ( -40.90) >DroYak_CAF1 9566 99 - 1 GACUA--------GUGAAGGGCAGACGGCGGGGUGGACUGGGCCACCCACCCUGGCAGAAAA--CUCUGUCUGCUCGCAGUACAAAUGCACUGUCAGAAA--GAAGUACAA (((.(--------((...(((((((((.((((((((..........)))))))).)(((...--.)))))))))))(((.......))))))))).....--......... ( -39.00) >DroAna_CAF1 9113 99 - 1 GAACACACAACAUUUGCACAGCAGACUG----------UCGGCCACCCACCCUGGCAGAAAA--UUGUGUCUGCAUACAGAGAGCAGGCACUGUAAACAAUUGAGGAAUAA .......(((..((((((.......(((----------((((.........)))))))....--..((((((((.........))))))))))))))...)))........ ( -23.60) >consensus GACUA________GCGAAGGGCAGACGGCGGGUUGGGGUGGGCCACCCACCCUGGCAGAAAA__CUCUGUCUGCUCACAGUACACAUGCACUGUCAGAAA____UGUUAAA ..................(((((((((.((((.((((........)))).)))).)(((......)))))))))))................................... (-20.74 = -22.80 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:23 2006