Locus 1393

Sequence ID 3L_DroMel_CAF1
Location 4,054,027 – 4,054,140
Length 113
Max. P 0.821336
window2164

overview

Window 4

Location 4,054,027 – 4,054,140
Length 113
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 78.41
Mean single sequence MFE -27.22
Consensus MFE -20.94
Energy contribution -20.54
Covariance contribution -0.40
Combinations/Pair 1.16
Mean z-score -1.58
Structure conservation index 0.77
SVM decision value 0.68
SVM RNA-class probability 0.821336
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4054027 113 + 23771897
GAUAGCCGACGGCGCCAGUUAAUUGCAAAUACUGCUCGAUACCCUACACUUGUCAGGGUGUACCCAACACGCUCUAAAACUAUCUUGCAUUAAAAU-C--UUGCACCAAUAAAUUU
(((((.....((((...(((....(((.....)))...(((((((((....)).)))))))....))).))))......))))).((((.......-.--.))))........... ( -22.40)
>DroSec_CAF1 8217 100 + 1
GAUAGCCGACGGCGCCAGUUAAUUGCAAAUACUGCUCGAUACCCUACACUUGUCAGGGUGUACCCAACCGGCCCUAAAACUAUCU----------------GGCACCAAUAAAUUU
(((((.....((.(((.(((....(((.....)))...(((((((((....)).)))))))....))).))))).....))))).----------------............... ( -25.10)
>DroSim_CAF1 8173 100 + 1
GAUAGCCGACGGCGCCAGUUAAUUGCAAAUACUGCUCGAUACCCUACACUUGUCAGGGUGUACCCAACCGGCCCUAAAACUAUCG----------------UGCACCAAUAAAUUU
(((((.....((.(((.(((....(((.....)))...(((((((((....)).)))))))....))).))))).....))))).----------------............... ( -25.60)
>DroEre_CAF1 8324 103 + 1
GAUAGCCGACGGCGCCAGUUAAUUGCAAAUACUGCCCGAUACCCUACACUUGUCAGGGUGUACCCAGU-GGGCCGAAAUCUAUCGUUC-UCCGCAUUCCUUUACA-----------
(((((....((((.((.((.....))....((((....(((((((((....)).)))))))...))))-))))))....)))))....-................----------- ( -28.60)
>DroYak_CAF1 8828 115 + 1
GAUAGCCGACGGCGCCAGUUAAUUGCAAAUACUGCCCGAUACCCUACACUUGUUGGGGUGUGCCCAGU-GGCCCGAAAGCUAUCUUGCAUUCGAAUUGCAUUGCAAACAAACAUUU
((((((...(((.(((.((.....))....((((..(.(((((((((....).)))))))))..))))-))))))...))))))(((((............))))).......... ( -34.40)
>consensus
GAUAGCCGACGGCGCCAGUUAAUUGCAAAUACUGCUCGAUACCCUACACUUGUCAGGGUGUACCCAAC_GGCCCUAAAACUAUCUU_C_U____AU____UUGCACCAAUAAAUUU
(((((.....((.(((.(((....(((.....)))...(((((((((....)).)))))))....))).))))).....)))))................................ (-20.94 = -20.54 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:21 2006