| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,045,921 – 4,046,041 |
| Length | 120 |
| Max. P | 0.718809 |
| Location | 4,045,921 – 4,046,041 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.56 |
| Mean single sequence MFE | -43.23 |
| Consensus MFE | -24.89 |
| Energy contribution | -25.81 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4045921 120 + 23771897 UGCCAAGCCGUAUCAGGCGAUACCAGGACCACGAGGACCCUUUGGAAUGGGUAAUCUAUACAAUUACCUGCCCGGAAUCGGAUCCUAUUCCUGGCUAAGAUUGCACCAAGCCGGCCAGGA ..((..((((......(((((.((((((.....((((.(((((((...(((((((.......)))))))..)))))...)).))))..)))))).....))))).......))))..)). ( -38.12) >DroVir_CAF1 2126 120 + 1 UGGCAAGCCAUUUGAGGCAAUACCAGGGCCACGAGGUCCGCUUGGAUUAGGCAAUCUGUAUAACUAUAUGCCUGGCAUAGGUAGCUACUCCUGGCUGCAGCUGCACAAGGCCGGCCAGGA ((((..(((......)))..((((.(((((....)))))(((......(((((...((((....))))))))))))...)))))))).(((((((((..(((......)))))))))))) ( -46.60) >DroGri_CAF1 2302 120 + 1 UGCGAAACCAUUCGAUUCGAUGCCAGGGCCACGCGGUCCGUUUGGCCUCGGUAAUCUUUACAAUUAUAUGCCUGGCAUUGGUGCCUAUUCGUGGCUGCAGCUGCACAAGGCCGGACAGGA .......((.((((..(((((((((((((((.(((...))).)))))...(((.....)))..........)))))))))).((((....(..((....))..)...))))))))..)). ( -40.40) >DroWil_CAF1 51 120 + 1 UGCCAAGCCAUUCGAGGCGAUUCCUGGACCACGCGGUCCUUUUGGACUGGGCAAUCUUUACAAUUAUAUGCCUGGCAUUGGCAGCUACUCCUGGCUGCAAUUGCACAAAGCUGGCCAGGA ......(((......)))...((((((.(((.(((((((....)))))(((((...............))))).(((...(((((((....)))))))...))).....))))))))))) ( -47.76) >DroMoj_CAF1 2996 120 + 1 CGUCAAACCAUUUGAGGCGAUGCCGGGGCCACGAGGUCCGUUUGGACUGGGUAAUCUGUACAACUAUAUGCCUGGCAUUGGUGCCUACUCCUGGCUGCAGUUGCACAAGGCUGGCCAGGA ..............((((((((((((((((....(((((....))))).)))....((((....))))..)))))))))...))))..(((((((..(((((......)))))))))))) ( -45.20) >DroAna_CAF1 54 120 + 1 UGCCAAGCCCUACGAAUUAAUUCCCGGACCACGCGGUCCCUUUGGCUUGGGAAAUCUGUACAACUACUUGCCCGGAAUCGGUUCCUAUUCCUGGCAAAGAUUGCAUCAAGCCGGACAGGA ........(((..............(((((....))))).((((((((((..((((((((....)))(((((.(((((.(....).))))).))))))))))...)))))))))).))). ( -41.30) >consensus UGCCAAGCCAUUCGAGGCGAUACCAGGACCACGAGGUCCGUUUGGACUGGGUAAUCUGUACAACUAUAUGCCUGGCAUUGGUACCUACUCCUGGCUGCAAUUGCACAAAGCCGGCCAGGA ......(((.............((((((((....)))))...))).(((((((...............)))))))....)))......(((((((((.....((.....))))))))))) (-24.89 = -25.81 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:18 2006