| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,045,604 – 4,045,698 |
| Length | 94 |
| Max. P | 0.747147 |
| Location | 4,045,604 – 4,045,698 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 67.29 |
| Mean single sequence MFE | -20.70 |
| Consensus MFE | -6.83 |
| Energy contribution | -7.37 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4045604 94 - 23771897 ---CGAUGUUUUCGCUCUUUAAAUUAAGAGAGCCAAAAUGGGAAUAGUAUAUUCUUAAAAAGAAAGGUAUACUUUUCGGCUUUACG-UUUUUAU--UGAU ---(((((....(((((((......)))))((((....((((((((...))))))))....((((((....))))))))))...))-....)))--)).. ( -22.20) >DroSec_CAF1 24871 94 - 1 ---AGAUAUUUUCGCUCUUUGAAUUAAGAGAGCCAAAAUGGGAAUAGUAUAUUCUUAAAAAGAAAGGUAUACUUUUUGGCUGUACG-UUUUUAU--UAAU ---...((((((.(((((((......))))))).))))))((((((...)))))).....(((((.(((((((....)).))))).-)))))..--.... ( -20.60) >DroSim_CAF1 24918 94 - 1 ---AGAUAUUUUCGCUCUUUGAAUUAAGAGAGCCAAAAUGGGAAUAGUAUAUUCUUAAAAAGAAAGGUAUACUUUUCGGCUGUACG-UUUUUAU--UGAU ---...((((((.(((((((......))))))).)))))).(((.(((((((..((......))..))))))).))).........-.......--.... ( -21.40) >DroEre_CAF1 28357 94 - 1 ---AAGUAUUUUCACUCUUAAAACCAAGAGAGCCGAAAUAGGAAGAGAAUAUGGCCAUAAAGAAUGGUAUACUUUUGGGCUCUAAG-UGUACGG--UGAU ---..((((((((.(((((......)))))..((......))..))))))))...........((.((((((((.........)))-))))).)--)... ( -20.60) >DroYak_CAF1 26101 93 - 1 ---AGGUAUUUUCACUCUUAA-CUUAAGAGAAUCAAGGCGGGAAAUUAAUGUGGCCUUAAAGAAUAAUAUACUUUCGGGCUGCAAA-UGUAUAU--AGAU ---..((((...((((((((.-..))))))...................((..((((.((((.........)))).))))..))..-)).))))--.... ( -17.20) >DroAna_CAF1 26808 89 - 1 CGUGGAAAUUCGAACUCUUUGAAAAGAGAG----AGAGUGGAAACA-----UU--CCAAAAGCUUAACAUACCUUUAGGCGUUAAAAUAUAUACUGCAAU .(..(.........((((((....))))))----.(((((....))-----))--).....((((((.......)))))).............)..)... ( -22.20) >consensus ___AGAUAUUUUCACUCUUUAAAUUAAGAGAGCCAAAAUGGGAAUAGUAUAUUCUCAAAAAGAAAGGUAUACUUUUCGGCUGUAAG_UUUAUAU__UGAU ......((((((.(((((((......))))))).))))))............................................................ ( -6.83 = -7.37 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:17 2006