| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 428,315 – 428,432 |
| Length | 117 |
| Max. P | 0.886454 |
| Location | 428,315 – 428,432 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.54 |
| Mean single sequence MFE | -39.62 |
| Consensus MFE | -25.08 |
| Energy contribution | -25.92 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 428315 117 + 23771897 UCAAAGGAGCAACUACUGCGCCUUUUUGAAUGCUCAGAAGGGCAUUGGUGAACUCCUGCAGCUGCUGCGAGGACAUGGACUCGCAGGACUUCAUCAGUGUCUGGGUGAGAUCUCCAC--- .....((((..(((...((((((((((((....))))))))))(((((((((.((((((.((....))(((........))))))))).)))))))))))...))).....))))..--- ( -48.50) >DroVir_CAF1 33713 99 + 1 U------------------GCCCUUUUGUAUGCUCAGCAGUGCAUUGGUGAACUCUUGCAGCUGCUGCGAGGACAUCGACUCGCAGGAUUUCAUGAGCGUCUGCGUAAGAUCGCCAU--- .------------------((.(((.((((((((((((((((((..((....))..)))).))))((((((........))))))........)))))))..))).)))...))...--- ( -34.80) >DroPse_CAF1 61258 111 + 1 UCCCUGGAG---------CUCCCUUCUGGAUGCUCAACAAAGCAUUUGUGAACUCCUGCAGCUGCUGCGAGGACAUGGACUCGCAGGACUUCAUGAGGGUCUGGGUGAGGUCCCCGCCUC ..((..((.---------..(((((..(((((((......)))))))(((((.((((((.((....))(((........))))))))).))))))))))))..)).(((((....))))) ( -44.00) >DroGri_CAF1 17877 99 + 1 C------------------GCCCUUCUGUAUGCUAAGCAGCGCCUUGGUAAAGUCCUGCAGCUGCUGCGAGGACAUCGAUUCGCAGGACUUCAUCAGCGUCUGGGUGAGAUCACCAG--- .------------------..................((((((..((((.(((((((((.((....))(((........)))))))))))).))))))).)))((((....))))..--- ( -34.80) >DroMoj_CAF1 18653 99 + 1 U------------------GACCUUCUGUAUGCUCAGCAGCGCAUUCGUGAACUCCUGCAGCUGCUGCGAGGACAUCGACUCGCAAGACUUCAUCAGCGUUUGGGUCAGGUCUCCGG--- .------------------(((((((((.(((((.(((((((((...(....)...))).))))))(((((........)))))...........))))).))))..))))).....--- ( -34.20) >DroPer_CAF1 58842 111 + 1 UCCCUGGAG---------CUCCCUUCUGGAUGCUCAACAAAGCAUUUGUGAACUCCUGCAGCUGCUGCGAGGACAUGGACUCGCAGGACUUCAUGAGGGUCUGGGUGAGAUCCCCUCCUC .....((((---------...(((((.(((((((......)))))))(((((.((((((.((....))(((........))))))))).))))))))))...(((......))))))).. ( -41.40) >consensus U__________________GCCCUUCUGUAUGCUCAGCAGAGCAUUGGUGAACUCCUGCAGCUGCUGCGAGGACAUCGACUCGCAGGACUUCAUCAGCGUCUGGGUGAGAUCCCCAC___ ..............................(((((((....((.((((((((.((((((.((....))(((........))))))))).)))))))).)))))))))............. (-25.08 = -25.92 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:36 2006