Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,040,557 – 4,040,653 |
Length | 96 |
Max. P | 0.914928 |
Location | 4,040,557 – 4,040,653 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 89.19 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -19.76 |
Energy contribution | -19.56 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.27 |
Mean z-score | -1.96 |
Structure conservation index | 0.80 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4040557 96 - 23771897 UUUCCGGUGGGGCAACUCAUGUCCAGUGUGGAAAAUAAUAU-UUGGUUUAUGUGUACCAACAAGUAUUUAGUAUCA-UUGUGAUUUCCCGCCAUUAAU .....(((((((........((((((((((..(((((....-(((((........)))))....)))))..)).))-))).))).)))))))...... ( -23.30) >DroSec_CAF1 19849 96 - 1 UUUCCGGUGGGGCAACUCAUGUCCAGUGGGGAAAAUAAUAU-UUGGUUUAUGUGUACCAACAAGUAUUUAGUAUCA-UUGUGAUUUCCCGCCAUUAAU .....(((((((........(((((((((...(((((....-(((((........)))))....)))))....)))-))).))).)))))))...... ( -24.50) >DroSim_CAF1 19922 96 - 1 UUUCCGGUGGGGCAACUCAUGUCCAGUGGGGAAAAUGAUAU-UUGGUUUAUGUGUACCAACAAGUAUUUAGUAUCA-UUGUGAUUUCCCGCCAUUAAU .....(((((((((.....))))).((((((((((((((((-(..((...(((......)))...))..)))))))-))....))))))))))))... ( -26.90) >DroEre_CAF1 23238 97 - 1 UUUCCGGUGGGGCAACUUAUGUCCAGUGGGGAAAACAUUAUUUUGGUUUAUGUGUACUAACAUGUAUUUCGUAUCA-UUGUGAUUUCCCACCAUUCAU .....(((((((((.....))))).((((((((.(((......(((..(((((((....)))))))..))).....-.)))..))))))))))))... ( -26.70) >DroYak_CAF1 20977 97 - 1 UUUCCGGUGGGGCAACUCAUGUCCAGUGAGAAAUAUA-UAUUAUGGUUUAUGUGUAUCACAAAGUAUUUUAUAUCAACUGUUUUUUCCCACCAUUAAG .....(((((((...(((((.....)))))....(((-((..(((.(((.((.....)).))).)))..)))))...........)))))))...... ( -22.50) >consensus UUUCCGGUGGGGCAACUCAUGUCCAGUGGGGAAAAUAAUAU_UUGGUUUAUGUGUACCAACAAGUAUUUAGUAUCA_UUGUGAUUUCCCGCCAUUAAU .....(((((((...(((((.....)))))......(((((.(((((........)))))...))))).................)))))))...... (-19.76 = -19.56 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:15 2006