| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,038,278 – 4,038,391 |
| Length | 113 |
| Max. P | 0.500000 |
| Location | 4,038,278 – 4,038,391 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.16 |
| Mean single sequence MFE | -28.61 |
| Consensus MFE | -16.74 |
| Energy contribution | -18.97 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4038278 113 - 23771897 GAUGCCGUGAAUCAUGUGGCAUGAAAACCCACAGAA--AUCGAUUGUGGAAAAUUUAGUUCAUGAUGAAGUUGAGCGAUAUGAAUGUCCAGCAUGGCCAAGUUAUGGCAAAA-UCC ..((((((((.(((((((((((......((((((..--.....))))))........(((((.........))))).......))).))).))))).....))))))))...-... ( -29.30) >DroSec_CAF1 17657 113 - 1 GAUGCCGUGAAUCAUGUGGCAUGAAAACCCACAGAA--AUCGGCUGUGGAAAAUUUAGUUCAUGUUGCAGUUGCGCGAUAUGAAUGUCCAGCAUGGCCAAGUUGUGGACAAA-UCC .((((((.........))))))......((((((..--...(((((((.........(((((((((((......)))))))))))......)))))))...)))))).....-... ( -35.16) >DroSim_CAF1 17698 113 - 1 GAUGCCGUGAAUCAUGUGGCAUGAAAACCCACAGAA--AUCGGCUGUGGAAAAUUUAGUUCAUGUUGCAGUUGCGCGAUUUGAAUGUCCAGCAUGGCCAAGUUGUGGCCAAA-UCC .((((((((.....((..(((((((...((((((..--.....)))))).........)))))))..))....))))...((......))))))(((((.....)))))...-... ( -36.10) >DroEre_CAF1 17986 97 - 1 GAUGC-AUGAAUCAUGUGGCAUGAAAACCCACAGAA--A---------------UUAGUUCAUGUUGUAGUUCGGCGAUAUGAAUGUCCGGCAAAGCCAUGUUGCAGCAAAG-UCU (((..-.((.....((..((((..............--.---------------...(((((((((((......)))))))))))....(((...)))))))..)).))..)-)). ( -23.80) >DroYak_CAF1 18709 103 - 1 GAUGCCGUGAAUCAUGUGGCAUGAAAACCCACAGAA--AUCGGCUGAGGAAAAUUUAGUUCAUGUUGUAGUUCGGCGAUAUGGGUGUCCAGCAUGGCCAAGUUAA----------- ...((((((.....((.(((((......((.(((..--.....))).))..........(((((((((......)))))))))))))))).))))))........----------- ( -26.90) >DroAna_CAF1 19109 97 - 1 GGCGCCAUGAAUCAUGUGGCAUGAAAACCCAAAGAAAAAUCCGCAUGCAAAUAUCUAGUCCAUGC---------GCCAAACGGA----------AGCCAAACUGGGGAAACAUUAC ((((((((.......)))))......................(((((.............)))))---------)))...(...----------.)((.....))(....)..... ( -20.42) >consensus GAUGCCGUGAAUCAUGUGGCAUGAAAACCCACAGAA__AUCGGCUGUGGAAAAUUUAGUUCAUGUUGCAGUUGCGCGAUAUGAAUGUCCAGCAUGGCCAAGUUGUGGCAAAA_UCC ...((((((..((.(((((.........)))))))......................(((((((((((......)))))))))))......))))))................... (-16.74 = -18.97 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:14 2006