Locus 1383

Sequence ID 3L_DroMel_CAF1
Location 4,021,889 – 4,021,979
Length 90
Max. P 0.932710
window2149

overview

Window 9

Location 4,021,889 – 4,021,979
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -25.86
Consensus MFE -25.48
Energy contribution -25.48
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.99
SVM decision value 1.22
SVM RNA-class probability 0.932710
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4021889 90 + 23771897
UGAAGAUGGGGAAUGCAGAGGCUCGAGUAGCGAGUGUGGCAUGAAUGCGUUAAGUUUGCAUUAGCGUUUUGCGUUUAACAAGUCUGGGGC
...(((((..(((((((((((((((.....)))))...((...((((((.......)))))).)).))))))))))..))..)))..... ( -25.70)
>DroSec_CAF1 1424 90 + 1
UGAAGAUGGGGAAUGCAGAGGCUCGAGUAGCGAGUGUGGCAUGAAUGCGGUAAGUUUGCAUUAGCGUUUUGCGUUUAACAAGUCUGGGCC
...(((((..(((((((((((((((.....)))))...((...(((((((.....))))))).)).))))))))))..))..)))..... ( -26.50)
>DroSim_CAF1 1466 90 + 1
UGAAGAUGGGGAAUGCAGAGGCUCGAGUAGCGAGUGUGGCAUGAAUGCGUUAAGUUUGCAUUAGCGUUUUGCGUUUAACAAGUCUGGGCC
...(((((..(((((((((((((((.....)))))...((...((((((.......)))))).)).))))))))))..))..)))..... ( -25.70)
>DroEre_CAF1 1436 90 + 1
UGAAGAUGGGGAAUGCAGAGGCUCGAGUAGCGAGUGUGGCAUGAAUGCGUUAAGUUUGCAUUAGCGUUUUGCGUUUAACAAGUCUGGGGC
...(((((..(((((((((((((((.....)))))...((...((((((.......)))))).)).))))))))))..))..)))..... ( -25.70)
>DroYak_CAF1 1360 90 + 1
UGAAGAUGGGGAAUGCAGAGGCUCGAGUAGCGAGUGUGGCAUGAAUGCGUUAAGUUUGCAUUAGCGUUUUGCGUUUAACAAGUCUGGGGC
...(((((..(((((((((((((((.....)))))...((...((((((.......)))))).)).))))))))))..))..)))..... ( -25.70)
>consensus
UGAAGAUGGGGAAUGCAGAGGCUCGAGUAGCGAGUGUGGCAUGAAUGCGUUAAGUUUGCAUUAGCGUUUUGCGUUUAACAAGUCUGGGGC
...(((((..(((((((((((((((.....)))))...((...((((((.......)))))).)).))))))))))..))..)))..... (-25.48 = -25.48 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:06 2006