Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,016,264 – 4,016,384 |
Length | 120 |
Max. P | 0.500000 |
Location | 4,016,264 – 4,016,384 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.56 |
Mean single sequence MFE | -41.18 |
Consensus MFE | -22.77 |
Energy contribution | -22.92 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.31 |
Mean z-score | -2.76 |
Structure conservation index | 0.55 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4016264 120 + 23771897 GAUUCGUGGAGAACUACUUCCUUCGCGAGCGUCAGGAGUUAUUCUCGGUUUUUGAAUACCGCGCCUGGAUGGUGUUCUUUAUCGAAUGGAACACCAUGGCCAUGACUUUUGUGUGGAACU ...((((((((.........))))))))(((.((((((((((...((((........)))).(((...((((((((((.........))))))))))))).)))))))))))))...... ( -40.30) >DroSec_CAF1 5978 120 + 1 GAUUUGUGGAGAACUACUUCCUCCGCGAGCGCCAAGAGUUAUUCUCAGUUUUUGAAUACCGCGCCUGGAUGGUGUUCCUUAUCGAAUGGAACACCAUGGCCAUGACUUUUGUCUGGAACU ...((((((((.........))))))))((((...(((.....))).((........)).))))....((((((((((.........))))))))))..(((.(((....)))))).... ( -39.20) >DroSim_CAF1 6731 120 + 1 GAUUUGUGGAGAACUACUUUCUCCGCGAGCGCCAGGAGUUAUUCUCGGUUUUUGAAUACCGCGUCUGGAUGGUGUUCCUUAUCGAAUGGAACACCAUGGCCAUGACUUUUGUCUGGAACU (.(((((((((((.....)))))))))))).(((((((.....)))(((........)))....))))((((((((((.........))))))))))..(((.(((....)))))).... ( -45.50) >DroEre_CAF1 7754 120 + 1 GAUUCGUGGAGAACUAUUUCCUGCGGGAGCGCCAGGAGGUGUUCUCGGUUGUUGAUUACCAUGCAUGGAUGGUGUUCUUUAUUGAAUGGAACACCAUGGCCAUGACUUUUGUCUGGAACU .(((((((((((((.((((((((((....)).))))))))))))))(((........)))...)))))))((((((((.........))))))))....(((.(((....)))))).... ( -48.00) >DroYak_CAF1 6014 120 + 1 GUUUCGUGGAGAACUACUUUCUGCGGGAGCGACAGGAGGUAUUCUCGGUGGUUGAUUACCAUGCCUGGAUGGUGUUCUUCAUAGAAUGGAACACCAUGGCCAUGACUUUUGUGUGGAACU (((((((((((((.(((((((((((....)).)))))))))))))).(((((.....)))))(((...((((((((((.........)))))))))))))))).((......))))))). ( -44.90) >DroAna_CAF1 5998 120 + 1 GUUUUUUGCAGAACUAUUUUAUACGCGAACGUCAAGAGAUAUUUUCUGUAAUUCCCUACAACCCCUGGCUGCUACUCUUCAUCGAGUGGAGCACUCUAUCCAUGACCUUUGUGUGGAAUU ((((......)))).......((((((((.((((.(.((((.....((((......)))).......(((.((((((......)))))))))....))))).)))).))))))))..... ( -29.20) >consensus GAUUCGUGGAGAACUACUUCCUCCGCGAGCGCCAGGAGUUAUUCUCGGUUUUUGAAUACCACGCCUGGAUGGUGUUCUUUAUCGAAUGGAACACCAUGGCCAUGACUUUUGUCUGGAACU ...((((((((((...((((...((....))...))))...)))))(((........)))..(((...((((((((((.........))))))))))))))))))............... (-22.77 = -22.92 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:03 2006