Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 427,574 – 427,693 |
Length | 119 |
Max. P | 0.510643 |
Location | 427,574 – 427,693 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 82.54 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -29.37 |
Energy contribution | -29.57 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.24 |
Mean z-score | -1.32 |
Structure conservation index | 0.75 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 427574 119 + 23771897 UCGUGCUUCUGCAGUGAGUCCAUGCGCGGCGGCGAGAACGAGUCCAGAUUGUUGGCCGCCGACAGAGAACUGCAGCAGUCCGAUUGCGAGUCGAUGAAAUUGCUGCAGAAUGGGUUUUA ...(((....)))..((..((((..((((((((...(((((.......))))).))))))).)......((((((((((.((((.....)))).....)))))))))).))))..)).. ( -42.80) >DroVir_CAF1 31836 112 + 1 UCGUGCUGCUGCAGCGAGUCCAUGCGCGGCGGCGAAAACGAAUCCAAAUUGUUGGCCGCCGACAGCGAACUGCAGCAAUCCGACUGCGAGUCAAUGAAAUUGCUGCA-A----AGCA-- ...((((..((((((((...(((((.(((((((...(((((.......))))).)))))))...))((..(((((........)))))..)).)))...))))))))-.----))))-- ( -46.70) >DroGri_CAF1 16898 114 + 1 UCGUGCUGCUGCAGCGAAUCCAUGCGCGGUGGCGACAACGAAUCCAAAUUGUUGGCCGCCGACAGAGAACUGCAGCAAUCGGACUGCGAAUCGAUGAAAUUGCUGCACAA---ACCA-- ..((((((((((((....((..((..(((((((..((((((.......))))))))))))).))..)).))))))))(((((........))))).........))))..---....-- ( -40.10) >DroWil_CAF1 12538 114 + 1 UCAUGCUUCUGCAGUGAGUCCAUGCGCGGUGGCGAGAAUGAAUCAAGAUUAUUGGCGGCCGACAGUGAACUGCAGCAAUCCGAUUGCGAGUCGAUGAAAUUGCUGCAA-----GCAAAA ...((((..(((((..(...(((.(((....)))...)))........((((((((....(.(((....)))).(((((...)))))..))))))))..)..))))))-----)))... ( -34.00) >DroMoj_CAF1 16994 113 + 1 UCGUGCUGCUGCAGCGAGUCCAUGCGCGGAGGCGAAAACGAGUCCAAGUUGUUGGCAGCCGACAGCGAACUGCAGCAGUCCGACUGCGAGUCGAUGAAAUUGCUAGA-AG---ACCA-- (((..(((((((((.((.((....(((....))).....)).))...((((((((...))))))))...)))))))))..)))((((((..........)))).)).-..---....-- ( -41.00) >DroAna_CAF1 4837 110 + 1 UCGCGCUUCUGCAACGAAUCCAUUCGCGGUGGCGAGAACGAGUCCAGGUUGUUAGUCGCCGAAAGAGAGCUGCAGCAGUCCGACUGCGAGUCGAUGAAAUUUCUGUAAAA--------- (((.((....))..)))(((.((((((((((((((.(((((.......)))))..)))))......(..(((...)))..).))))))))).)))...............--------- ( -30.80) >consensus UCGUGCUGCUGCAGCGAGUCCAUGCGCGGUGGCGAGAACGAAUCCAAAUUGUUGGCCGCCGACAGAGAACUGCAGCAAUCCGACUGCGAGUCGAUGAAAUUGCUGCA_AA___ACCA__ .........((((((((...(((((.(((((((...(((((.......))))).)))))))...))((..((((((.....).)))))..)).)))...))))))))............ (-29.37 = -29.57 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:35 2006