Locus 138

Sequence ID 3L_DroMel_CAF1
Location 427,574 – 427,693
Length 119
Max. P 0.510643
window196

overview

Window 6

Location 427,574 – 427,693
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 82.54
Mean single sequence MFE -39.23
Consensus MFE -29.37
Energy contribution -29.57
Covariance contribution 0.20
Combinations/Pair 1.24
Mean z-score -1.32
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.510643
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 427574 119 + 23771897
UCGUGCUUCUGCAGUGAGUCCAUGCGCGGCGGCGAGAACGAGUCCAGAUUGUUGGCCGCCGACAGAGAACUGCAGCAGUCCGAUUGCGAGUCGAUGAAAUUGCUGCAGAAUGGGUUUUA
...(((....)))..((..((((..((((((((...(((((.......))))).))))))).)......((((((((((.((((.....)))).....)))))))))).))))..)).. ( -42.80)
>DroVir_CAF1 31836 112 + 1
UCGUGCUGCUGCAGCGAGUCCAUGCGCGGCGGCGAAAACGAAUCCAAAUUGUUGGCCGCCGACAGCGAACUGCAGCAAUCCGACUGCGAGUCAAUGAAAUUGCUGCA-A----AGCA--
...((((..((((((((...(((((.(((((((...(((((.......))))).)))))))...))((..(((((........)))))..)).)))...))))))))-.----))))-- ( -46.70)
>DroGri_CAF1 16898 114 + 1
UCGUGCUGCUGCAGCGAAUCCAUGCGCGGUGGCGACAACGAAUCCAAAUUGUUGGCCGCCGACAGAGAACUGCAGCAAUCGGACUGCGAAUCGAUGAAAUUGCUGCACAA---ACCA--
..((((((((((((....((..((..(((((((..((((((.......))))))))))))).))..)).))))))))(((((........))))).........))))..---....-- ( -40.10)
>DroWil_CAF1 12538 114 + 1
UCAUGCUUCUGCAGUGAGUCCAUGCGCGGUGGCGAGAAUGAAUCAAGAUUAUUGGCGGCCGACAGUGAACUGCAGCAAUCCGAUUGCGAGUCGAUGAAAUUGCUGCAA-----GCAAAA
...((((..(((((..(...(((.(((....)))...)))........((((((((....(.(((....)))).(((((...)))))..))))))))..)..))))))-----)))... ( -34.00)
>DroMoj_CAF1 16994 113 + 1
UCGUGCUGCUGCAGCGAGUCCAUGCGCGGAGGCGAAAACGAGUCCAAGUUGUUGGCAGCCGACAGCGAACUGCAGCAGUCCGACUGCGAGUCGAUGAAAUUGCUAGA-AG---ACCA--
(((..(((((((((.((.((....(((....))).....)).))...((((((((...))))))))...)))))))))..)))((((((..........)))).)).-..---....-- ( -41.00)
>DroAna_CAF1 4837 110 + 1
UCGCGCUUCUGCAACGAAUCCAUUCGCGGUGGCGAGAACGAGUCCAGGUUGUUAGUCGCCGAAAGAGAGCUGCAGCAGUCCGACUGCGAGUCGAUGAAAUUUCUGUAAAA---------
(((.((....))..)))(((.((((((((((((((.(((((.......)))))..)))))......(..(((...)))..).))))))))).)))...............--------- ( -30.80)
>consensus
UCGUGCUGCUGCAGCGAGUCCAUGCGCGGUGGCGAGAACGAAUCCAAAUUGUUGGCCGCCGACAGAGAACUGCAGCAAUCCGACUGCGAGUCGAUGAAAUUGCUGCA_AA___ACCA__
.........((((((((...(((((.(((((((...(((((.......))))).)))))))...))((..((((((.....).)))))..)).)))...))))))))............ (-29.37 = -29.57 +   0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:35 2006