Locus 1377

Sequence ID 3L_DroMel_CAF1
Location 4,014,754 – 4,014,874
Length 120
Max. P 0.733006
window2143

overview

Window 3

Location 4,014,754 – 4,014,874
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.33
Mean single sequence MFE -44.83
Consensus MFE -17.37
Energy contribution -18.12
Covariance contribution 0.75
Combinations/Pair 1.27
Mean z-score -2.20
Structure conservation index 0.39
SVM decision value 0.43
SVM RNA-class probability 0.733006
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4014754 120 - 23771897
GAAGAUCACUGAGGUCCAGAAGAUCACAGCGAAUCCUCUGCCAGAAUUCAUUCGGCAUUUGCUGCCUCACAUGCUGCCUGAUGCGCCAGUGCAUCUGCUGGAAUCGCAUCUGCAUUCCGC
...((((.(((.....)))..)))).(((((((.....((((.(((....))))))))))))))..........(((..(((((((((((......)))))...)))))).)))...... ( -36.00)
>DroVir_CAF1 4513 120 - 1
GCAAGUCACAUAGAUCAAGCAAAUCAUAGCGAACCUGCUCCCAGAACUCGCUGGACAUAUGUUUCCCGGCAUGUUGACGUAUGCGCCAGUGCAUCUGCUGGAAGCGCAGCUGCAGACUAC
...((((.....(((.......))).((((.....((((.((((....((((((.((((((((..(......)..))))))))..))))))......)))).))))..))))..)))).. ( -34.60)
>DroPse_CAF1 4214 120 - 1
GCAGAUCGUUCAGAUCCAGAAAAUCGCCGCGCACUGUCUGCCAGAAUUCGUUUGGCAUCCGCUGGAAGGCAUUCUGGCGGAUGCGCCAGUGCAUCUGCUGGAAGCGCAUCUGCAAUCCCC
((((((((((....(((((...(((((.(((((...(((((((((((((.((..((....))..)).)).))))))))))))))))..))).))...))))))))).))))))....... ( -52.30)
>DroGri_CAF1 6771 120 - 1
GCAAAUCACUUAGAUCCAACAGAUCAUAGCGCAGCUGCUCCCAAAACUCGCUGGACAUUUGCUUGUCGGCAUGCUGACGAAUGCGCCAGUGUAGCUGCUGAAAUCGCAGCUGCAUACUGC
(((.........((((.....))))...(((((((.....(((........)))......))(((((((....))))))).)))))..((((((((((.......))))))))))..))) ( -39.20)
>DroMoj_CAF1 9066 120 - 1
GCAAAUCGCAAAGGUCCAGCAGAUCGUAGCGCAGCUGCUCCCAGAACUCGCUGGGCAUCGGCUGGGUGGAGUGGCGCCGUAUGCGCCAGUGCAUCUGCUGGAAGCGGAACUGCAGGCCGC
(((..((((.....((((((((((....((.((((((..(((((......)))))...)))))).))(.(.((((((.....)))))).).))))))))))).))))...)))....... ( -56.60)
>DroPer_CAF1 4208 120 - 1
GCAGAUCGUUCAGAUCCAGAAAAUCGCAGCGCACUGUCUGCCAAAAUUCGUUUGGCAUCCGCUGAAAGGCAUUCUGGCGGAUGCGCCAGUGCAUCUGCUGGAAGCGCAUCUGCAAUCCCC
((((((......(((.......)))...((((...(..(((((((.....)))))))..)(((....))).(((..(((((((((....)))))))))..)))))))))))))....... ( -50.30)
>consensus
GCAAAUCACUCAGAUCCAGAAAAUCACAGCGCACCUGCUCCCAGAACUCGCUGGGCAUCUGCUGGAAGGCAUGCUGACGGAUGCGCCAGUGCAUCUGCUGGAAGCGCAUCUGCAAUCCGC
(((.........(((.......)))...((((......................(((((((................))))))).(((((......)))))..))))...)))....... (-17.37 = -18.12 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:00 2006