Locus 1375

Sequence ID 3L_DroMel_CAF1
Location 4,009,570 – 4,009,668
Length 98
Max. P 0.814478
window2140

overview

Window 0

Location 4,009,570 – 4,009,668
Length 98
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.03
Mean single sequence MFE -27.37
Consensus MFE -16.98
Energy contribution -16.43
Covariance contribution -0.55
Combinations/Pair 1.17
Mean z-score -1.84
Structure conservation index 0.62
SVM decision value 0.66
SVM RNA-class probability 0.814478
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4009570 98 - 23771897
UUUCAUAAGGCAUUUCUAUU---AGGAAGUUGA-------------------UUUUAACAGCUAAGAGACAAUCGCUGUUAGAUUUGAAUACACUUGUGAUCAUAUGGAAAUAGAUGGGA
..(((((((...(((((...---.)))))(..(-------------------.(((((((((............))))))))).)..).....)))))))((.(((....)))))..... ( -20.30)
>DroSec_CAF1 4316 117 - 1
---UAAGAAGCAUUUCUGUUAUCAGGAAGUUGUUUAGGUCACUCAGUUGUAUUUCUAACAGCUAAGAGAAAAUCGCUGUUGGGUUUGAAUACUCUUGUGAUCAUAUGGAAAUAGAUGGGA
---....(((((((((((....))))))..))))).((((((..(((..((..(((((((((............)))))))))..))...)))...)))))).(((....)))....... ( -29.00)
>DroSim_CAF1 4319 117 - 1
---UAAGAAGCAUUUCUGUUAACAGGAAGUUGUUCAGGUCUCUCAGUUGCAUUUCUAACAGCUAAGAGAAAAUAGCUGUUGGGUUUGAAUACACUUGAGAUCAUAUGGAAAUAGAUCGGA
---.....(((.((((((....)))))))))..((((((......((..((..(((((((((((........)))))))))))..))...))))))))((((.(((....)))))))... ( -32.80)
>consensus
___UAAGAAGCAUUUCUGUUA_CAGGAAGUUGUU_AGGUC_CUCAGUUG_AUUUCUAACAGCUAAGAGAAAAUCGCUGUUGGGUUUGAAUACACUUGUGAUCAUAUGGAAAUAGAUGGGA
........(((.((((((....)))))))))......................(((((((((............)))))))))................(((.(((....)))))).... (-16.98 = -16.43 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:57 2006