Locus 137

Sequence ID 3L_DroMel_CAF1
Location 427,400 – 427,494
Length 94
Max. P 0.712148
window195

overview

Window 5

Location 427,400 – 427,494
Length 94
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.46
Mean single sequence MFE -23.03
Consensus MFE -14.52
Energy contribution -14.55
Covariance contribution 0.03
Combinations/Pair 1.19
Mean z-score -1.78
Structure conservation index 0.63
SVM decision value 0.38
SVM RNA-class probability 0.712148
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 427400 94 - 23771897
AGUACGAGCGUCGUCGCAAGACCCUGGAAGUUCGACGAAAGUCUUGCCAAGGUAAGAAACACAAUUCUAUUCA-AG---CAUAGAACAGAA-UAUGUAA
.((.(((((.(((((....)))....)).))))))).....((((((....))))))...((((((((.(((.-..---....))).))))-).))).. ( -24.80)
>DroSec_CAF1 8584 92 - 1
AGUACGAGCGUCGUCGCAAGACCCUGGAAGUCCGACGAAAGUCUUGCCAAGGUAAGAAACACAAUUCUAUUCA-AG---CAUAGAACAGGA-UA--UAA
........(((((((....)))...((....))))))....((((((....))))))......(((((.(((.-..---....))).))))-).--... ( -22.90)
>DroSim_CAF1 8778 94 - 1
AGUACGAGCGUCGUCGCAAGACCCUGGAAGUCCGACGAAAGUCUUGUCAAGGUAAGAAACACAAUUCUAUUCA-AG---CAUAGAACAGAA-UAUCUAA
.......(..(((((....)))(((((....))(((....)))......)))...))..)...(((((.(((.-..---....))).))))-)...... ( -19.90)
>DroEre_CAF1 8650 91 - 1
AGUACGAGCGUCGUCGCAAGACCCUGGAAGUCCGACGAAAGUCUUGCCAAGGUGAGGAACCCAAGUGUA-ACC-AG---UAACUAACAGCG-UA--UAA
.(((((......(((....))).((((...((((((....)))(..(....)..))))((....))...-.))-))---..........))-))--).. ( -24.10)
>DroYak_CAF1 8852 92 - 1
AGUACGAGCGUCGUCGCAAGACCCUGGAAGUCCGACGAAAGUCUUGCCAAGGUGAGCAAC-CAAGUCUAUGCU-AG---UAAAUAACAAAGAUA--UAA
..(((.(((((.(((....)))..(((......(((....)))(((((.....).)))))-)).....)))))-.)---)).............--... ( -22.40)
>DroAna_CAF1 4664 93 - 1
AAUACGAACGUCGUCGAAAGAACUUGGAAGUAAGACGGAAGUCUUGCCAAGGUAAGCUAU-----UAUCGUGAGAGUUUGAUAUAAUAUAU-UUUUUAA
....(((((....((....)).(((((...((((((....))))))))))).........-----..((....)))))))...........-....... ( -24.10)
>consensus
AGUACGAGCGUCGUCGCAAGACCCUGGAAGUCCGACGAAAGUCUUGCCAAGGUAAGAAACACAAUUCUAUUCA_AG___CAUAGAACAGAA_UA__UAA
...((...(((((((....)))...((....))))))...))(((((....)))))........................................... (-14.52 = -14.55 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:34 2006