Locus 1369

Sequence ID 3L_DroMel_CAF1
Location 3,982,493 – 3,982,593
Length 100
Max. P 0.864108
window2129

overview

Window 9

Location 3,982,493 – 3,982,593
Length 100
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -20.10
Consensus MFE -17.72
Energy contribution -17.48
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.44
Structure conservation index 0.88
SVM decision value 0.84
SVM RNA-class probability 0.864108
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3982493 100 - 23771897
GCU-UGUUCUAACUGCUUCGCUUUAUAGCUGAAAUUUCAAGGUUUAUGCUGUAAAUACUGCAGCUGAUGUUUACUAAGCAUCGUUAAAUAUAAAACCAA-AA
((.-.((....)).))((((((....))).))).......(((((..((((((.....)))))).((((((.....))))))..........)))))..-.. ( -20.70)
>DroSec_CAF1 54804 100 - 1
GCU-UGUUCUAACUGCUUCGCUUUAUAGCUGAAAUAUCAAGGUUUAUGCUGUAAAUACUGCAGCUGAUGUUUACUAAGCAUCGUUAAAUAUAAAACCAA-AA
((.-.((....)).))((((((....))).))).......(((((..((((((.....)))))).((((((.....))))))..........)))))..-.. ( -20.70)
>DroSim_CAF1 58331 100 - 1
GCU-UGUUCUAACUGCUUCGCUUUAUAGCUGAAAUAUCAAGGUUUAUGCUGUAAAUACUGCAGCUGAUGUUUACUAAGCAUCGUUAAAUAUAAAACCAA-AA
((.-.((....)).))((((((....))).))).......(((((..((((((.....)))))).((((((.....))))))..........)))))..-.. ( -20.70)
>DroEre_CAF1 56384 101 - 1
GCUUUGUUCUAACUGCUUCGCUUUAUAGUUGAAAUAUCAAAGUUUAUGCUGUAAAUACUGCAGCUGAUGUUUAUUAAGCAUCGUUAAAUAUAAAACCAA-AA
(((((((((.(((((..........))))))))....))))))....((((((.....)))))).((((((.....)))))).................-.. ( -17.70)
>DroYak_CAF1 58432 102 - 1
GCUUUGUUCCAACUGCAUCGCUUUAUAGUGGAAAUAUCAAAGUUUAUGCUGUAAAUACAGCAGCUGAUGUUUAUUAAGCAUCGUUAAAUAUAAACCCAAAAA
(((((((((((.(((.(......).))))))))....))))))...((((((....))))))...((((((.....)))))).................... ( -20.70)
>consensus
GCU_UGUUCUAACUGCUUCGCUUUAUAGCUGAAAUAUCAAGGUUUAUGCUGUAAAUACUGCAGCUGAUGUUUACUAAGCAUCGUUAAAUAUAAAACCAA_AA
............((((.....((((((((..((((......))))..))))))))....))))..((((((.....)))))).................... (-17.72 = -17.48 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:47 2006