Locus 1367

Sequence ID 3L_DroMel_CAF1
Location 3,981,782 – 3,981,884
Length 102
Max. P 0.785009
window2126

overview

Window 6

Location 3,981,782 – 3,981,884
Length 102
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 81.59
Mean single sequence MFE -31.88
Consensus MFE -21.07
Energy contribution -21.18
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.12
Structure conservation index 0.66
SVM decision value 0.57
SVM RNA-class probability 0.785009
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3981782 102 + 23771897
CAAGUUGAUGGGCUAUGGCU--------AUAUGGCGAUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGCU--GGAGUUGGCCAGGAUAAAUCAA
......(((..(((((.(((--------((....(....)..))))).)))))....)))((((.(((.(((((((.((.((...)))--)...))))))).))).)))).. ( -32.80)
>DroPse_CAF1 56850 80 + 1
CAU--GGAUGGGCUAU----------------------------GGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGCACU--GGAGUUGGACAGGAUAAAUCAA
(((--((.....))))----------------------------)(((.((((.((((((....)))))).))))....)))....((--(........))).......... ( -23.90)
>DroSim_CAF1 57620 102 + 1
CAAGUUGAUGGGCUAUGGCU--------AUAUGGCGCUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGCU--GGAGUUGGCCAGGAUAAAUCAA
....(((((......(((((--------(..((((((((..(.((....((((.((((((....)))))).))))..))).)))))))--)....))))))......))))) ( -38.30)
>DroYak_CAF1 57691 110 + 1
CAAGUUGAUGGGCUAUGGCUAUAUGGCUAUAUGGCGAUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGCU--GGAGUUGGCCAGGAUAAAUCAA
....(((((...((((.(((((((....))))))).)))).....(((.((((.((((((....)))))).))))....))).((.((--((......)))).))..))))) ( -36.90)
>DroAna_CAF1 57665 99 + 1
CACGUUGAUGGGCUAUGGCU--------AU-----GAUGGCGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGCCCGGGAGUUGGCCAGGAUAAAUCAA
....(((((......(((((--------(.-----...((((...(((.((((.((((((....)))))).))))....)))..)))).......))))))......))))) ( -35.50)
>DroPer_CAF1 57214 80 + 1
CAU--GGAUGGGCUAU----------------------------GGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGCACU--GGAGUUGGACAGGAUAAAUCAA
(((--((.....))))----------------------------)(((.((((.((((((....)))))).))))....)))....((--(........))).......... ( -23.90)
>consensus
CAAGUUGAUGGGCUAUGGCU________AU_____GAUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGCU__GGAGUUGGCCAGGAUAAAUCAA
..........(((((..............................(((.((((.((((((....)))))).))))....)))...((......)))))))............ (-21.07 = -21.18 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:44 2006