| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,980,942 – 3,981,034 |
| Length | 92 |
| Max. P | 0.961096 |
| Location | 3,980,942 – 3,981,034 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.22 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -23.76 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.961096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3980942 92 - 23771897 UCUGUCCAUU-UUUAUGGACAUGUGCGUAAGCGAUCCGUGCGAAAAAUGGGCGCUUCGCAGCAAUUACCACC----GC-----GGGAGAAGUCAGA--------G-CCGAC ..(((((((.-...)))))))((((((.(((((.(((((.......)))))))))))))).))....((...----..-----)).....(((...--------.-..))) ( -28.70) >DroPse_CAF1 56393 100 - 1 UCUGUCCAUU-UUUAUGGACAUGUGCGUAAGCGAUCCGUGCGAAAAAUGGGCGCUUCGCAGCAAUUACCUUC-AAUGCGAUGAAGAAGAAGGUAGC--------U-CCAAC ..(((((((.-...)))))))((((((.(((((.(((((.......)))))))))))))).)).((((((((-....(......)..)))))))).--------.-..... ( -34.80) >DroGri_CAF1 62891 81 - 1 GCUAUCUAUU-UUUAUGGACAUGUGCGUAAGCGAUCCGUGCGAAAAAUGGGCGCUUCGCGGCAAUUACCUUUGA----------------AUCCGA--------A-A---- (((.(((((.-...))))).....(((.(((((.(((((.......))))))))))))))))............----------------......--------.-.---- ( -21.90) >DroWil_CAF1 68735 85 - 1 UUUAUCUAUUCUUUAUGGACAUGUGCGUAAGCGAUCCGUGCGAAAAAUGGGCGCUUCGCCGCAAUUACCUUC-A----------------AUCCGA--------A-ACAGC ....(((((.....)))))..((((((.(((((.(((((.......)))))))))))).)))).........-.----------------......--------.-..... ( -19.90) >DroAna_CAF1 56803 100 - 1 UCUGUUCAUU-UUUAUGGACAUGUGCGUAAGCGAUCCGUGCGAAAAAUGGGCGCUUCGCAGCAAUUACCUCC----GC-----AGG-GAAGUCUGUCCUGCCGGGCCGGAC ..(((((((.-...)))))))((((((.(((((.(((((.......)))))))))))))).))....(((((----((-----(((-(.......))))).))))..)).. ( -35.70) >DroPer_CAF1 56743 100 - 1 UCUGUCCAUU-UUUAUGGACAUGUGCGUAAGCGAUCCGUGCGAAAAAUGGGCGCUUCGCAGCAAUUACCUUC-AAUGCGAUGAAGAAGAAGGUAGC--------U-CCAAC ..(((((((.-...)))))))((((((.(((((.(((((.......)))))))))))))).)).((((((((-....(......)..)))))))).--------.-..... ( -34.80) >consensus UCUGUCCAUU_UUUAUGGACAUGUGCGUAAGCGAUCCGUGCGAAAAAUGGGCGCUUCGCAGCAAUUACCUUC_A__GC_____AG__GAAGUCAGA________A_CCAAC ..(((((((.....)))))))((((((.(((((.(((((.......))))))))))))).)))................................................ (-23.76 = -23.73 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:43 2006