Locus 1365

Sequence ID 3L_DroMel_CAF1
Location 3,978,782 – 3,978,884
Length 102
Max. P 0.828333
window2124

overview

Window 4

Location 3,978,782 – 3,978,884
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 96.66
Mean single sequence MFE -22.22
Consensus MFE -20.94
Energy contribution -20.98
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.29
Structure conservation index 0.94
SVM decision value 0.71
SVM RNA-class probability 0.828333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3978782 102 + 23771897
GGCUAAUCAAGCCCAAUUUAGGUUGUCCAACACAGAAUGCGGCUUGGAAAAGUCAAAGUCAGAUAAGUUGGACUCUAAUUUAAUCAUUUUCCAUUUUUUUUC
((((.....))))....(((((..(((((((...(....)(((((....)))))............))))))))))))........................ ( -21.60)
>DroSec_CAF1 51019 101 + 1
GGCUAAUCAAGCCCAAUUUAGGUUGUCCAACAAAAAAUGCGGCUUGGGAAAGUCAAAGUCAGAUAAGUUGGACUCUAAUUUAAUCAUUUUCCAUUUU-UUUC
((((..(((((((((.(((..(((....)))..))).)).)))))))...)))).......((((((((((...))))))).)))............-.... ( -22.00)
>DroSim_CAF1 54503 101 + 1
GGCUAAUCAAGCCCAAUUUAGGUUGUCCAACACAAAAUGCGGCUUGGGAAAGUCAAAGUCAGAUAAGUUGGACUCUAAUUUAAUCAUUUUCCAUUUU-UUUC
((((..(((((((((.(((..(((....)))..))).)).)))))))...)))).......((((((((((...))))))).)))............-.... ( -22.00)
>DroEre_CAF1 52257 101 + 1
GGCUAAUCAAGCCCAAUUUAGGUUGUCCAACACAAAAUGCGGCUUGGGAAAGUCAAAGUCAGAUAAGUUGGACUCUAAUUUAAUCAUUUUCCAUUUUU-UUG
((((..(((((((((.(((..(((....)))..))).)).)))))))...)))).......((((((((((...))))))).))).............-... ( -22.00)
>DroYak_CAF1 54471 102 + 1
GGCUAAUCAAGCCCAAUUUGGGCUGUCCAACACAAAAUGCGGCUUGGGAAAGUCAAAGUCAGAUAAGUUGGACUCUAAUUUAAUCAUUUUCCAUUUUUUUUC
((..(((..(((((.....)))))(((((((.(.....).(((((....)))))............)))))))............)))..)).......... ( -23.50)
>consensus
GGCUAAUCAAGCCCAAUUUAGGUUGUCCAACACAAAAUGCGGCUUGGGAAAGUCAAAGUCAGAUAAGUUGGACUCUAAUUUAAUCAUUUUCCAUUUUUUUUC
((((..(((((((((.(((..(((....)))..))).)).)))))))...)))).......((((((((((...))))))).)))................. (-20.94 = -20.98 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:42 2006